Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0551 ATGAATCATGCCTCAACTCAAATCATGAAGACCCTCCTAGATGCTGACACCATTGTTAACTTGAACAATCAAAATAATATACTAGGTGTTCCTTCACACCCTTCTTCTTCTGCTGCTGTAGAAGCAGTTCTACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGGTGAAAATGTTGGATGGTATCCACCACTCCCTGTCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGACATAGAAGCTCTCAGCAGAACAAAACAACAAGCGCCAAAACTGGAGGATTTCTTTGGTGGGCAAAGCCAAACAACGGTGACTCCTGAATGCAACAACGCCAGAGAAGCACTGCCTCTGAACTATAACATGTTTCACAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCATGATGTTAACCAGCAACACTCATATTATTCTTCTGCATCAAGAAACAACAACAACCATCATCAGGTGATGCTACAAGGATACAATATGGCTAAGGAGGAAGTGCCTGGTATCCACCATGCAATGGAGGCAAAGCTGGTTGTTCCTTTGGACGATAATAGAGGTGAATCGCTGTCCATTGGATCGGTGGCGTTCGGGGATTTACAGTCACTGAGGTTGTCCATGAGTCCAAGCTCCCAATCAAGTTGTGTCACAACCTCACAACAAGCATCACATGCTGTCATGAGCACTTCAAAGAAGAGGGTGCATGATGAAATGGTGGAGCAGAACCAGAAGCAAATTGCTCATAGAAAATCCATTGATACCTTTGGTCAGAGAACATCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATACAAACTTCCCATTGGAAAATTATCAAAATGAGCTTTTGCAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGCAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCTGCTGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAGGAGAAAAAGAGAGGTCATTGTTAATAATAACCATAAACCATCTACTATTGAAGAATCGATTCTAATGCACAAGAGCTGCAAAAACCCTCAGATCATGATGATTAATCATCCACCAACAATGGCATTAGAGGAGGAATCAAGTAGTAAGACTGGAACACATATTTCAAATGAAGATAAGACAGGTTTGCCAATTCTCTATGGAAGACCTTCAACAACAGCAGCCTCTACTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACCACCATCACATCTGAGACCTAATAAGCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCATGGACAGACGCATAA 1689 0.4221 MNHASTQIMKTLLDADTIVNLNNQNNILGVPSHPSSSAAVEAVLPPSFCCYYGVEGENVGWYPPLPVLPLKSDGSLFDIEALSRTKQQAPKLEDFFGGQSQTTVTPECNNAREALPLNYNMFHNPNYLNHVQENINLLHDVNQQHSYYSSASRNNNNHHQVMLQGYNMAKEEVPGIHHAMEAKLVVPLDDNRGESLSIGSVAFGDLQSLRLSMSPSSQSSCVTTSQQASHAVMSTSKKRVHDEMVEQNQKQIAHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFPLENYQNELLQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQARRKREVIVNNNHKPSTIEESILMHKSCKNPQIMMINHPPTMALEEESSSKTGTHISNEDKTGLPILYGRPSTTAASTRLLATIPTGWDQPPSHLRPNKLSLPQMPVFAAWTDA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0551 562 SMART rav1_2 369 434 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 CDD AP2 368 429 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 Pfam AP2 domain 370 420 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 CDD AP2 266 333 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 ProSiteProfiles AP2/ERF domain profile. 369 428 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 Gene3D AP2/ERF domain 369 430 IPR036955 GO:0003700|GO:0006355
Ahy5g0551 562 Gene3D AP2/ERF domain 266 335 IPR036955 GO:0003700|GO:0006355
Ahy5g0551 562 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 PRINTS Ethylene responsive element binding protein signature 410 430 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 560 - -
Ahy5g0551 562 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
Ahy5g0551 562 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Ahy5g0551 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 45 560 - -
Ahy5g0551 562 SUPERFAMILY DNA-binding domain 368 428 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0551 Ahy-Chr5 6856785 6860190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0551 48 562 AP2-EREBP Transcription Factor Family AT4G37750 49.821 1.07e-158 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ahy5g0551 AP2 1.00E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0551 K09285 - gmx:100792451 578.556