Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0514 ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACGACGGCCACACCACCTCCTCCGTCAACCAAACCCAAGCCGTATTCCTGTCATCATGAGGCACCAGAGCCATCTCTAACGCTGGGTCTATCCGGCGAGAGCTTCCTGAAAAGCAATAATAATAAAGTCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAAGAGCTTCAAGAACTGAAGGCGCTGAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGGCTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA 840 0.5214 MGLDQDANNNNNNNSSSSGLELVLGLSLTTTTATPPPPSTKPKPYSCHHEAPEPSLTLGLSGESFLKSNNNKVAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0514 279 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Ahy5g0514 279 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Ahy5g0514 279 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Ahy5g0514 279 Coils Coil 207 237 - -
Ahy5g0514 279 SMART HOX_1 143 205 IPR001356 GO:0003677
Ahy5g0514 279 MobiDBLite consensus disorder prediction 116 150 - -
Ahy5g0514 279 CDD homeodomain 145 202 IPR001356 GO:0003677
Ahy5g0514 279 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Ahy5g0514 279 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Ahy5g0514 279 Gene3D - 138 206 - -
Ahy5g0514 279 MobiDBLite consensus disorder prediction 1 100 - -
Ahy5g0514 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 279 - -
Ahy5g0514 279 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Ahy5g0514 279 MobiDBLite consensus disorder prediction 1 34 - -
Ahy5g0514 279 MobiDBLite consensus disorder prediction 61 99 - -
Ahy5g0514 279 PANTHER - 15 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0514 Ahy-Chr5 6247561 6249003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0514 1 279 Homeobox Transcription Factor Family AT4G37790 55.732 5.15e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy5g0514 Homeodomain 1.90E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0514 K09338 - gmx:100795135 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0514 5 6247561 6249003 Ahy11g1066 11 28511225 28514485 PCT
Ahy5g0514 5 6247561 6249003 Ahy1g1111 1 23515993 23518917 PCT
Ahy11g1066 11 28511225 28514485 Ahy5g0514 5 6247561 6249003 PCT
Ahy1g1111 1 23515993 23518917 Ahy5g0514 5 6247561 6249003 PCT