Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0494 ATGGAGGAATTAAACGGATTGGCAACCAACTGGTTATCTGATCTGGATATAGATGATTACGAATTGTTTTCAGAGTGCAATTTGAAGAAGTTTCTGGATGAGGATGAAGAGAATCAGTTTGATGAGATGGTGATGAGTGCAGTGGTGGGGGAGGAGGAGGAAGAGGAGGAGGAGAGGCCAACTAAGCAACTCAGAACTTGCTCATCATCAAGCATCACTAACTACGTCTCATCTAATTCTTCTTCTTCTTCTTCTCCCACCTCCCAGATTCTGTCTTTTGAAAACTCTTACAACCCATCCTCCCAATTTTATGGCTTTGAATTTGATGCAACTCCTAATGATAAGGTTTCACCGCAACCACAAGTTGGTAATAACAATGATAAGAACAAGCTGGAACAAACAAGGAAACCTCAAAGCCAAGGGAGTAAGAGACAGGCGGCTCACTCTCACGATCACATCATGGCTGAGAGAAAGCGAAGGGAGAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCTTCGGTACTGGGAGATGCAATCAAGTACGTGAAAGAGCTTCAGGGGCGATTGAAGGTTCTAGAAGAAGAGAACAAGAGAGAGGTGGAGTCTGTGGTGATTGTGAAGAATCCACGCTTCATCACGAGCAGCAGCGACGATGACTCCTCTTCCTGTGATGATGACACCTTGGAAGCAGACGGCGAAGCAGCACTAGCACACGTGGAAGCAAGAGTGGCGGCGGCCGAGAAGGAGGTGCTGCTCCGGATCCATTGCAAGAAACAGAAGGGCATTTACGTCAAATTACTGTCGGAGATACAAAGCCTTCACCTGTACGTGGTCCATAGCAGTGTGCTACCGTTCGGGGATTCGGTTCTCGACATAACCATCGTTGCTCAGATGGGCACAGAATACAAGTTGAGCATAAGAGATCTTGTGAGGAATCTACGCGTGGCTACGCTGAAAACGATGTCGTCGTCATAG 1008 0.4692 MEELNGLATNWLSDLDIDDYELFSECNLKKFLDEDEENQFDEMVMSAVVGEEEEEEEERPTKQLRTCSSSSITNYVSSNSSSSSSPTSQILSFENSYNPSSQFYGFEFDATPNDKVSPQPQVGNNNDKNKLEQTRKPQSQGSKRQAAHSHDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQGRLKVLEEENKREVESVVIVKNPRFITSSSDDDSSSCDDDTLEADGEAALAHVEARVAAAEKEVLLRIHCKKQKGIYVKLLSEIQSLHLYVVHSSVLPFGDSVLDITIVAQMGTEYKLSIRDLVRNLRVATLKTMSSS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0494 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 210 IPR036638 GO:0046983
Ahy5g0494 335 MobiDBLite consensus disorder prediction 145 159 - -
Ahy5g0494 335 SMART finulus 153 202 IPR011598 GO:0046983
Ahy5g0494 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Ahy5g0494 335 Coils Coil 186 213 - -
Ahy5g0494 335 MobiDBLite consensus disorder prediction 108 159 - -
Ahy5g0494 335 MobiDBLite consensus disorder prediction 49 91 - -
Ahy5g0494 335 Gene3D - 128 212 IPR036638 GO:0046983
Ahy5g0494 335 PANTHER TRANSCRIPTION FACTOR NAI1 32 330 - -
Ahy5g0494 335 PANTHER BHLH TRANSCRIPTION FACTOR 32 330 - -
Ahy5g0494 335 MobiDBLite consensus disorder prediction 64 91 - -
Ahy5g0494 335 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Ahy5g0494 335 MobiDBLite consensus disorder prediction 114 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0494 Ahy-Chr5 6028775 6031013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0494 7 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.176 5.71e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy5g0494 HLH 2.90E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0494 - - adu:107487595 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0494 5 6028775 6031013 Ahy11g1046 11 26371430 26377684 PCT
Ahy5g0494 5 6028775 6031013 Ahy1g1137 1 25794537 25800513 PCT
Ahy11g1046 11 26371430 26377684 Ahy5g0494 5 6028775 6031013 PCT
Ahy1g1137 1 25794537 25800513 Ahy5g0494 5 6028775 6031013 PCT