Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0489 ATGGCTGGTTTGGATTTAGGAACAGCTTCACGCTTCGTTCAAAACCTGCACAGACCAGAATTCAACCTGCATCACAACCATCATCATCAACAACAACATCATCATCATCATCATCACCAACAAGATTCTGAAGAAGACGCCAACAACAACCACCAAGATCACTATGAGGATGATGCTCCCCACGACCACACGGGTTTGGACCTCGCAACGGCCTCCGCGGGAGATGTCGTCGCACGCCGTCCTAGGGGTAGGCCGCCGGGATCCAAGAACAAGCCCAAGCCGCCGGTCATCATAACCAGGGAGAGCGCCAACACGCTCAGAGCACACATCCTCGAGGTAGCCAGCGGCTGCGACGTCTTTGACAGCGTCGCCACCTACGCCCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGTGGCAGCGGCACCGTCAATAACGTCACCATCAGGCAACCAGCCGCCGCCGGAGCAGTAGTCACGCTCCACGGCAGGTTCGAGATATTGTCCCTCTCCGGCTCGTTCCTTCCGCCGCCGGCTCCCCCCGGCGCCACCAGCCTAAGCATATACCTCGCCGGAGGGCAGGGACAGGTGGTCGGAGGGAGTGTGGTTGGAGAGTTGATCGCGGCGGGGCCGGTGATTGTGATCGCTTCTTCGTTCACGAACGTGGCTTATGAGAGGTTGCCTTTGGACGAAGATGAACAGCAGCTTCCAGGTGGCGGCGGCGGTCAGGGTTCCGGTGGTGGTGGTGGTAATAGTCCGTTTGGTGACCCGTCCTCAGGGCTTCCTTTCTTTAATTTGCCGGTGAATATGCCGAATAATGTTCAGTTGCCATCAGCAGTGGATGGGTTTTCACGTCCACCACCACCACCACCACCACCATTTTAA 882 0.5794 MAGLDLGTASRFVQNLHRPEFNLHHNHHHQQQHHHHHHHQQDSEEDANNNHQDHYEDDAPHDHTGLDLATASAGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGCDVFDSVATYARRRQRGICILSGSGTVNNVTIRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELIAAGPVIVIASSFTNVAYERLPLDEDEQQLPGGGGGQGSGGGGGNSPFGDPSSGLPFFNLPVNMPNNVQLPSAVDGFSRPPPPPPPPF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0489 293 MobiDBLite consensus disorder prediction 274 293 - -
Ahy5g0489 293 MobiDBLite consensus disorder prediction 25 97 - -
Ahy5g0489 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 278 IPR014476 GO:0003680
Ahy5g0489 293 ProSiteProfiles PPC domain profile profile. 103 239 IPR005175 -
Ahy5g0489 293 CDD DUF296 107 190 IPR005175 -
Ahy5g0489 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 220 IPR005175 -
Ahy5g0489 293 Gene3D - 106 235 - -
Ahy5g0489 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 278 - -
Ahy5g0489 293 MobiDBLite consensus disorder prediction 231 265 - -
Ahy5g0489 293 MobiDBLite consensus disorder prediction 37 64 - -
Ahy5g0489 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0489 Ahy-Chr5 5863207 5864925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0489 1 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.902 2.77e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0489 - - qsu:111992217 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0489 5 5863207 5864925 Ahy11g1041 11 25134765 25136472 PCT
Ahy5g0489 5 5863207 5864925 Ahy1g1144 1 27489396 27491104 PCT
Ahy11g1041 11 25134765 25136472 Ahy5g0489 5 5863207 5864925 PCT
Ahy1g1144 1 27489396 27491104 Ahy5g0489 5 5863207 5864925 PCT