Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0485 ATGCCACCAGTTCCACTTGCTCCCTACCCAACACCATCGGTTCCATATACTACGCCTCCATCAAATGGTGCACAGAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTACTGATGTATCCAGTTGGAGCCACGTCAGTGTGTTGTGCAGTTTGCAATGCAGTGACAGCAGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 447 0.4855 MPPVPLAPYPTPSVPYTTPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0485 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Ahy5g0485 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Ahy5g0485 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Ahy5g0485 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Ahy5g0485 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Ahy5g0485 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Ahy5g0485 148 PANTHER PROTEIN LSD1 3 144 IPR040319 -
Ahy5g0485 148 PANTHER PROTEIN LOL1 3 144 - -
Ahy5g0485 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0485 Ahy-Chr5 5831576 5833325 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy5g0485 zf-LSD1 8.90E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0485 - - mnt:21406053 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0485 5 5831576 5833325 Ahy11g1031 11 23916766 23919311 PCT
Ahy5g0485 5 5831576 5833325 Ahy1g1151 1 28530368 28532796 PCT
Ahy11g1031 11 23916766 23919311 Ahy5g0485 5 5831576 5833325 PCT
Ahy1g1151 1 28530368 28532796 Ahy5g0485 5 5831576 5833325 PCT