Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0484 ATGAGGGCCAAAGACAAGCACACCCGAACCAATCGCAAACCTCGATCCTCGCCCAATCCTAATTCCAATTCGGATTCCTGCCATAATAAAACGGTGGCCACGCCCAATTCCAACCGAAACCCTAACATTCCTCCCTACAGCTGGGGTTTCTGCACCGAAGACGAGCTCCAAGAGCTTCTCTTGAGGAACATGGAGATCGTCTACGCTGACGTAGTTTCCAAGATCGTGTCCATGGGCTACAGCGAGGACCAAGCTCTCAAGGCGGTCCTCAACAATGGCCATTGTTTCGGCGGCGTCGATGCGCTGGAGAACATACTCAACAATTCCTTGGCTTATCTCAAAAGCAACGGCAATTTGGAGGGTAGCGATGACACTATGCCTGTTTTCACCGATTTGATGCAATTGGAGGCGTATTCTCTTGCTGCTATGGTGTGTCTCTTGCAGCAGTTGAGGCCCAATTTGACTAAGGGTGATGCATTGTGGTGTTTGCTAGTCACTGATTTTCATGTCGGAAAGGCTAGCACAATTCAGGTTCCGGTTGCAAACAATGAATGTACTTGTTGTTCTTCGCGTACTGCTACTACTACTGCTACTACTACTACCACCAACACTGGTGACAATGCAGTTGGTGTTGTGTCTCCATCTCCACATTTTTGTGAGTCTCGAGGGGGACCTCCGGATTTTAATTTGGTCTTCGCTTGCGGCCATGAGATGAGTTTGCGGTTGCAGAGAGATATTGAATTCCCAAAAAGGTTTAATCTTTCTCCTTCGATGAAGTCCTTGTTGAAAAGAAATGTTGCACTGTGCGCTGCTGGTTTTAAGGCTCACTCAAAACAGTTGCCGCAGCCACAAGCCGTAGCCATTCCCGCTGGTAGCACTGGGCCGGCAGAGGATGCTGTTACCTCCATGATGAATAAATTTCGCGAGCTAAATCTCGATGATTGTATGAAGCTTCTTGCAGAGGATCAGAAGGATGAGGTGTTACTTGCTCTGTTTAATCAGGTTAAGGATCTCGAGAAAGAGCTCAAGGTCCGAAAGGATTGGGCTCATGAGAGGGCAGTGCAAGCAGCTACAAAGCTGAGCAATGATATGGCTGAGTTGAAAATGTTGAGGATGGAAAGCCAAAGAGAGGAGGCTCAGAAGTTAAAGAAAGGCAAGCAAGCGCTCGACGACGCGACAATGAAGAAACTATTAGAGATGGAGGAGGCATTGAGGAAGACTAGTGGTGAAGTTGATCAGGCGAATTCAACTGTCAAAAAGTTAGAGACGGAGAATGCAGAAATTAGAGCAGAGTTGGAGGCTTCTAAATTGAGTGCATCAGAGTCTGTCAAAAACTGTACACAGGTTGAGAAAAGGGAGAAAAAGTGTTTAAAGAGGCTTCTTGCTTGGGAAAAACAGATAGCAAAGCTACAACAGGAGATTTCAGATGAAAAACAGAAGATAGTGGAGATTGAAAAAGAATTGGCTCGGATTAGACAGTGTCAGAAAGAAGCTGAGGTCAAGGTCAGGGAAGAGTTGAAGGCTAAAGAGGAAGCCCTGGTACTAATTGAGGAGGAACGCCATAGCAAGGAAGCAGCTGAGGTTGACAGTAAGAGAAATCTTAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAACGTCGCAAGGATGATCTCCTGAGGCTTGAGCAGGAGCTTTCATGCCTTAAAGTATCTTCTCGATCTGCTGATAAGCATCGGAAATCAAAAGCTTCACGGACAGGTAATTCTGATGTTGCAAAGCCCCAAAGGGAGACAATCACAAAGCTTCTTAAAGAATTAGACAATCTTGAGGATTTTGAAGAAGAAGTCAACGGTGCTAGAGAATGTATCATATGCAAGGGAGACGAAGTTTCAATTGTTTTCTTGCCGTGTGCACACCAAATTATGTGTGGTAGCTGCAGCCAGGAGTATGGGAGGAAGGGCAAAGCTACCTGTCCCTGCTGCCGGGTTCCAATTGAACAGAGAATCCGTGTGTTCGGTGCAGGTTCTTAA 2013 0.4625 MRAKDKHTRTNRKPRSSPNPNSNSDSCHNKTVATPNSNRNPNIPPYSWGFCTEDELQELLLRNMEIVYADVVSKIVSMGYSEDQALKAVLNNGHCFGGVDALENILNNSLAYLKSNGNLEGSDDTMPVFTDLMQLEAYSLAAMVCLLQQLRPNLTKGDALWCLLVTDFHVGKASTIQVPVANNECTCCSSRTATTTATTTTTNTGDNAVGVVSPSPHFCESRGGPPDFNLVFACGHEMSLRLQRDIEFPKRFNLSPSMKSLLKRNVALCAAGFKAHSKQLPQPQAVAIPAGSTGPAEDAVTSMMNKFRELNLDDCMKLLAEDQKDEVLLALFNQVKDLEKELKVRKDWAHERAVQAATKLSNDMAELKMLRMESQREEAQKLKKGKQALDDATMKKLLEMEEALRKTSGEVDQANSTVKKLETENAEIRAELEASKLSASESVKNCTQVEKREKKCLKRLLAWEKQIAKLQQEISDEKQKIVEIEKELARIRQCQKEAEVKVREELKAKEEALVLIEEERHSKEAAEVDSKRNLKALRLKIEIDFQRRKDDLLRLEQELSCLKVSSRSADKHRKSKASRTGNSDVAKPQRETITKLLKELDNLEDFEEEVNGARECIICKGDEVSIVFLPCAHQIMCGSCSQEYGRKGKATCPCCRVPIEQRIRVFGAGS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0484 670 Coils Coil 397 438 - -
Ahy5g0484 670 Coils Coil 357 392 - -
Ahy5g0484 670 MobiDBLite consensus disorder prediction 1 40 - -
Ahy5g0484 670 MobiDBLite consensus disorder prediction 14 40 - -
Ahy5g0484 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 667 IPR013083 -
Ahy5g0484 670 Coils Coil 453 519 - -
Ahy5g0484 670 Pfam Zinc finger, C3HC4 type (RING finger) 614 661 - -
Ahy5g0484 670 PANTHER OS05G0141500 PROTEIN 2 668 IPR046934 -
Ahy5g0484 670 Pfam Family of unknown function (DUF6592) 64 173 IPR046527 -
Ahy5g0484 670 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 668 - -
Ahy5g0484 670 SUPERFAMILY RING/U-box 595 662 - -
Ahy5g0484 670 ProSiteProfiles Zinc finger RING-type profile. 616 656 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0484 Ahy-Chr5 5802972 5806131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0484 604 666 C3H Transcription Factor Family AT1G73950 34.921 7.22e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0484 - - adu:107487583 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0484 5 5802972 5806131 Ahy11g1161 11 34889869 34896306 PCT
Ahy5g0484 5 5802972 5806131 Ahy1g1156 1 29314528 29320653 PCT
Ahy11g1161 11 34889869 34896306 Ahy5g0484 5 5802972 5806131 PCT
Ahy1g1156 1 29314528 29320653 Ahy5g0484 5 5802972 5806131 PCT