Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0463 ATGGCGCTCCATATTTTGTGTGGATTTTTTCTTACCACCTTTGTTTTCATGCAAACACTGGCAGATACTTCTTCATCGTGCACCGATTGCTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAACGGTGCATGCGGCTTTGGTTCCTTTGGTGCTATGGTGAATGGCGGCGACGTATCTGCCGCTTCTAGTCTTTATCGAAATGGCGTTGGATGTGGCGCCTGTTACCAGGTGAGGTGTACGGAGAGTGGTTATTGCTCAGATAACGGTGTGACAGTGGTTATAACAGACGAAGGGTCAAGTGATAACACTGATTTCATTCTCACCGAACATGCCTTTGATCGTATGGCTCAGACCACTGATGCAGCAGCTTATCTCTTAGCCCTTGGCGTTCTTGATATTCAGTATACACGGGTTGCATGCAATTATCCACATGAGAACATAACATTCAAGATAGATGAGAGTAGCAGTAACCCTAATTACTTGGCATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTGCTGTCCAGCTTTGTGAGAGTGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGCCATGGTGCAGTGTGGACTAGCACCTCTCCTCCAAGTGGACCATTGTCTATAAGGATGTTGTTTAGTGATGAAGATGAACAAAATGAAGAATGGATTGTTCCTCCTAATAACTTACCCGCAGATTGGAAGCCTGGTCAAATATATGACTCTGGGATACAAGTTAGCTTTTAA 774 0.4406 MALHILCGFFLTTFVFMQTLADTSSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGAMVNGGDVSAASSLYRNGVGCGACYQVRCTESGYCSDNGVTVVITDEGSSDNTDFILTEHAFDRMAQTTDAAAYLLALGVLDIQYTRVACNYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCESENFECKLLDRSHGAVWTSTSPPSGPLSIRMLFSDEDEQNEEWIVPPNNLPADWKPGQIYDSGIQVSF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0463 257 PANTHER EXPANSIN-LIKE B1 8 255 - -
Ahy5g0463 257 SUPERFAMILY PHL pollen allergen 154 251 IPR036749 -
Ahy5g0463 257 Gene3D - 151 255 IPR036749 -
Ahy5g0463 257 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Ahy5g0463 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Ahy5g0463 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ahy5g0463 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Ahy5g0463 257 Pfam Expansin C-terminal domain 155 225 IPR007117 -
Ahy5g0463 257 Gene3D - 15 149 IPR036908 -
Ahy5g0463 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Ahy5g0463 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Ahy5g0463 257 PANTHER EXPANSIN-B3 8 255 - -
Ahy5g0463 257 SUPERFAMILY Barwin-like endoglucanases 25 152 IPR036908 -
Ahy5g0463 257 Pfam Lytic transglycolase 69 143 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0463 Ahy-Chr5 5566823 5569348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0463 4 256 Expansin Gene Family AT4G17030 41.732 2.32e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0463 - - ccaj:109799868 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0463 5 5566823 5569348 Ahy11g1191 11 36956763 36958782 PCT
Ahy5g0463 5 5566823 5569348 Ahy1g1184 1 31062903 31065070 PCT
Ahy11g1191 11 36956763 36958782 Ahy5g0463 5 5566823 5569348 PCT
Ahy1g1184 1 31062903 31065070 Ahy5g0463 5 5566823 5569348 PCT