Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0439 ATGGAACTTAAGTACCACCAATTTGGCCTTGTTTGTGTCATAATGCTCTTACCTGTAATGTGTACCTCTCAAGACTCATTTACGTGCTCCAGAGCAACCTATTATGGCAGCCCTGAATGCACTGCCAACCCAACGGGAGCTTGTGGCTTTGGCGAATATGGAACGGCGATCAACGATGGCAGCGTGGCAGGCGTGTCTTGGCTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATAGCAGAATACTGCGATGACTATGGAGCATATGTAGTGGTAACAGACTTCGGCGTGGGAGACAGAACCGACTTCATTATGAGTCCACGTGCTTATTCAAGATTGGCCAAGAACGAAGATGCATCTGCAGAGCTTTTCAAATACGGTGTGGTGGACGTAGAATACAAGAGGGTACCATGTAGATACGGTGGCTATAACATCATAGTCAAGGTGAATGAGCGCAGCTACAACCCACACTACTTAGCCATTGTAACTCTCTATGTTGGTGGAACACAAGACATAACTGCCGTTCAGTTCTGGCAGGAAGATTGCAAAGAATGGAGGCCAATGCGAAGGGCGTTTGGGACAGTGTTTGATGTTGAGAACCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGACTGGCAGTGCAGGGGTTTATTGGGTAGAGTCCAAGACCTTTATCACCAGTGATTGGAAGGCTGGAGCATCTTATGATACTCAAATCCAGCTTGAATAG 753 0.4714 MELKYHQFGLVCVIMLLPVMCTSQDSFTCSRATYYGSPECTANPTGACGFGEYGTAINDGSVAGVSWLWRNGSGCGACYQVRCKIAEYCDDYGAYVVVTDFGVGDRTDFIMSPRAYSRLAKNEDASAELFKYGVVDVEYKRVPCRYGGYNIIVKVNERSYNPHYLAIVTLYVGGTQDITAVQFWQEDCKEWRPMRRAFGTVFDVENPPRGDIKLRFQVTGSAGVYWVESKTFITSDWKAGASYDTQIQLE* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0439 250 Pfam Expansin C-terminal domain 153 227 IPR007117 -
Ahy5g0439 250 Gene3D - 17 144 IPR036908 -
Ahy5g0439 250 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Ahy5g0439 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Ahy5g0439 250 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Ahy5g0439 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Ahy5g0439 250 Gene3D - 145 246 IPR036749 -
Ahy5g0439 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Ahy5g0439 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Ahy5g0439 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Ahy5g0439 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ahy5g0439 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Ahy5g0439 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Ahy5g0439 250 PANTHER EXPANSIN-B3 4 249 - -
Ahy5g0439 250 SUPERFAMILY Barwin-like endoglucanases 12 148 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0439 Ahy-Chr5 5170336 5172147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0439 10 249 Expansin Gene Family AT4G17030 61.826 5.39e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0439 - - gmx:100802855 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0439 5 5170336 5172147 Ahy11g1262 11 41899687 41903347 PCT
Ahy5g0439 5 5170336 5172147 Ahy1g1247 1 35014662 35017076 PCT
Ahy11g1262 11 41899687 41903347 Ahy5g0439 5 5170336 5172147 PCT
Ahy1g1247 1 35014662 35017076 Ahy5g0439 5 5170336 5172147 PCT