Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0403 ATGGCTGAAGAGAGGTACAGCGGCGTCGTTCAGTGGTTCAGCAACTCCAAGGGCTTCGGCTTCATCAAGCCCGACCAAGGCGGTGACGACCTCTTCGTCCACCACTCCTCCATCCAATCTGATGGCGCTTTCCGAACCCTAGTTGATGGCGATCGCGTCGAGTTCTCCATTGCTGACAACAGCGACAAGCCCAAGGCTCTTGACGTCACTGGCCCCAACGGCGCGCCTCTGCGCTCCGCTCACGACTCTGCTCGCGCCGGTAACGATAACAGACGCAGCGCTGGTGCTGGAGGAGGAGGAGGCGGCGGAGCCTGTTACCAGTGTGGTGATTTCGGTCATCTTGCTAGGGATTGCAGCCGTGCTGGCAATGGCGGTGGTGGCGGCGGCGGCGGTGCATGCTACAGTTGCGGCGGATTCGGACACATGGCTAGGGATTGCGTCAGTGGAGGCGGCGGAGGAGGAGCAAACGGTGGGGGCTGCTTTAAATGCGGCGAGTTCGGGCACATGGCGAGGGATTGCAGTGGAGGTGGCGGTGGCGGTGGCGGTAATGGCGGTGGTTGCTTTAAGTGCGGTGAGTTTGGGCACATGGCGAGGGACTGCAGCGGAGGTGGCGGTAACGGTGGTGGTTGCTATAGGTGTGGTGAGGTTGGTCACTTGGCTAGGGATTGCAACAGAGAAGGTGGTTCCGGTGCTGGTGGAAACGGTGGAAAGAGCACGTGCTTCAATTGTGGGAAACCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGTTAA 777 0.6023 MAEERYSGVVQWFSNSKGFGFIKPDQGGDDLFVHHSSIQSDGAFRTLVDGDRVEFSIADNSDKPKALDVTGPNGAPLRSAHDSARAGNDNRRSAGAGGGGGGGACYQCGDFGHLARDCSRAGNGGGGGGGGACYSCGGFGHMARDCVSGGGGGGANGGGCFKCGEFGHMARDCSGGGGGGGGNGGGCFKCGEFGHMARDCSGGGGNGGGCYRCGEVGHLARDCNREGGSGAGGNGGKSTCFNCGKPGHFARECVEASG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0403 258 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Ahy5g0403 258 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 101 - -
Ahy5g0403 258 PANTHER COLD SHOCK DOMAIN PROTEIN 2 96 174 - -
Ahy5g0403 258 PANTHER COLD SHOCK DOMAIN PROTEIN 2 175 257 - -
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 PRINTS Eggshell protein signature 97 108 - -
Ahy5g0403 258 PRINTS Eggshell protein signature 228 246 - -
Ahy5g0403 258 PRINTS Eggshell protein signature 174 189 - -
Ahy5g0403 258 PRINTS Eggshell protein signature 201 211 - -
Ahy5g0403 258 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Ahy5g0403 258 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Ahy5g0403 258 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Ahy5g0403 258 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 Pfam Zinc knuckle 239 253 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 Pfam Zinc knuckle 104 119 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 Pfam Zinc knuckle 209 223 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 Pfam Zinc knuckle 186 201 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SUPERFAMILY Retrovirus zinc finger-like domains 227 254 IPR036875 GO:0003676|GO:0008270
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 240 253 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 160 173 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Ahy5g0403 258 SUPERFAMILY Retrovirus zinc finger-like domains 149 173 IPR036875 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 209 225 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SMART c2hcfinal6 239 255 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Ahy5g0403 258 Gene3D - 206 232 - -
Ahy5g0403 258 Gene3D - 182 205 - -
Ahy5g0403 258 Gene3D - 155 180 - -
Ahy5g0403 258 Gene3D - 233 258 - -
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 210 223 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Ahy5g0403 258 SUPERFAMILY Retrovirus zinc finger-like domains 95 147 IPR036875 GO:0003676|GO:0008270
Ahy5g0403 258 PANTHER COLD SHOCK PROTEIN 2 1 101 - -
Ahy5g0403 258 PANTHER COLD SHOCK PROTEIN 2 96 174 - -
Ahy5g0403 258 PANTHER COLD SHOCK PROTEIN 2 175 257 - -
Ahy5g0403 258 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Ahy5g0403 258 MobiDBLite consensus disorder prediction 62 100 - -
Ahy5g0403 258 Gene3D - 100 154 - -
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 187 200 IPR001878 GO:0003676|GO:0008270
Ahy5g0403 258 SUPERFAMILY Retrovirus zinc finger-like domains 178 226 IPR036875 GO:0003676|GO:0008270
Ahy5g0403 258 Gene3D - 6 85 IPR012340 -
Ahy5g0403 258 SMART csp_8 7 72 IPR011129 GO:0003676
Ahy5g0403 258 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0403 Ahy-Chr5 4717164 4718373 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy5g0403 CSD 1.60E-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0403 K09250 - gmx:106796585 284.263