Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0239 ATGGGGTCTAGTGGCAGCAAAGCCAATTCTTCTGCTTGCAGTTCATCGTCTTCTTCTTCGGGTAGTTTCAGGAAAGGTCGATCTAAGAGGCATAGAGGCTTCCCATCTTATTGTTTGGGAACAACTTCTGGATCTCATGACAGTGATCATGAAGACCAGGTTTGTGATCAGAACAAAGTAAATGGAAATGGAGTTGAAATAGTTTCGGATGAAGTGAAATCAAAATCCTTTAGAAAAGCCAAGTATGATGAGGAAATGCCTCCTAACATCGACCTTGGCGAGTGGGATCACACGGCATCCAGAACCGGTAGCAGCTCTAATCATGTTTCTTCAACTCAGTCTTTGAATCCTTCAAGTAGATTCCTTTCTCGCTTTAGCTTCATTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACCAGTCTTGGTTCATCAAGGCCTTGTCCTGTTTCTTCTGGAAGTCTCACCATATTTAACAGTGAAGATGAGCTTAATCCTCATCCAAGCCACCCTGGAAGCTTGATTAATAGAAATGAAACTCAACAACGTAGAGAATTGCTTAATGCATCTTTTGATGATCGAGTGCCTATTCAGTATCATGGAGGTGCTTCTACTGATTTTAGATCTAATGCACCAGCATTGGATTCCTTTGGCAACTTAGCAAGAAGTCCCACAATTTCTCCTGTCGCGGATGTGATTAGAGATGGGGATGGTACAAGAGAAGTGGTGGATATGAACTTGTTTTCTCCAAGAATTCATACAGAGGCAGAAAATGTTGAGACAAGACATACTGATAGACGAAATGGGGCTCGAGAACCTGTCGATCGAAATGTACGCTTCAGCCGAACTTTAAGTGTTGGAAGACTTAGAGATAGAGTACTCCGACGATCAACATTATCTGAGTTCACGTTTGGCCCTCTGCAACAGGAGAGGGAAGCAAGAGATGCTAGTTGGGACAGAGGAAGAGAAGTGGGGGAGAGAGATACGAGAGTGCCACGGACTAGTCAAAATGCTGTGAATTCTCCAACTACAATTTCTAGCTCCTCATTTAGTGTTCATGACTTTGATGTTGAGACTTCACGATCTAGAGAAACAAGGTATCAAGATCTGCTGGAACACAGATCTAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAATCTGTCTGGACATGACAGATCATGCGTCTTGTCTGGTCAGCACAGAAATGGTCGTTGTACATGCCGAAACGGTAGCCGTGATACGAACTCAACTGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTGATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCGGTTGTTCTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGAAGTCGTGGAATCTTTGCCTGTGAAATTATACACAAAGTGCCACAAACATCAAGAAGATGCTGTGCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTTCCTTGTCACCATGAATTCCATAAAACTTGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTAGAGGGGACATTTGTGTATCAGATACACTGCCAATGGAGAACTAA 1680 0.4345 MGSSGSKANSSACSSSSSSSGSFRKGRSKRHRGFPSYCLGTTSGSHDSDHEDQVCDQNKVNGNGVEIVSDEVKSKSFRKAKYDEEMPPNIDLGEWDHTASRTGSSSNHVSSTQSLNPSSRFLSRFSFIPGNISFRLSRTTSLGSSRPCPVSSGSLTIFNSEDELNPHPSHPGSLINRNETQQRRELLNASFDDRVPIQYHGGASTDFRSNAPALDSFGNLARSPTISPVADVIRDGDGTREVVDMNLFSPRIHTEAENVETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREARDASWDRGREVGERDTRVPRTSQNAVNSPTTISSSSFSVHDFDVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCVLSGQHRNGRCTCRNGSRDTNSTDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKCHKHQEDAVQCYICLVEYEDGDSMRVLPCHHEFHKTCIDKWLKEIHRVCPLCRGDICVSDTLPMEN* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0239 559 SMART ring_2 504 545 IPR001841 -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 1 62 - -
Ahy5g0239 559 Pfam Ring finger domain 503 546 IPR001841 -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 312 330 - -
Ahy5g0239 559 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 559 - -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 310 349 - -
Ahy5g0239 559 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 559 - -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 1 23 - -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 98 116 - -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 86 116 - -
Ahy5g0239 559 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Ahy5g0239 559 SUPERFAMILY RING/U-box 483 552 - -
Ahy5g0239 559 CDD RING-H2_PA-TM-RING 503 546 - -
Ahy5g0239 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 551 IPR013083 -
Ahy5g0239 559 MobiDBLite consensus disorder prediction 331 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0239 Ahy-Chr5 2675140 2680049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0239 223 553 C3H Transcription Factor Family AT5G45290 62.537 7.38e-122 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0239 - - gmx:100815830 803.897