Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0218 ATGGAAGATGAACAAACCAATGAGATTCTCCAAGAGCTCCTCAAAGTCGAGGTCGACATTCAAGATGTTCAAGAGCAAATTAGAGTGTTAGTTGAGAGGCAAGAGAAGTTGTACGAGAAAAAATCCGAGCTCAGTGCTATTCTGGAAGCGTGCAGAGAATCTGGGAATGAGGTTAATAATGGGGCTTCCATTTCTGTGGAGAATTGGTCTGGGGAATTTCAATGGGACTCTCAAGCTGATGATCTCAGGTTGAACATTTTTGGCATTTCCTCTTACCGTGCAAACCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGGGATGTCTTGGTCATTATGGCTGCAGGTGGTGGCAAGAGTCTTTGCTATCAGCTTCCAGCTGTTCTTCGTGACGGGATTGCTCTTGTTGTCAGTCCCTTGCTTTCCTTAATCCAAGATCAGGTAATGGGTTTGACTGCCTTGGGCATTCCGGCACATATGTTGACTTCGACAACAAGTAAGGAAGATGAGAAATTCATATACAAAGCATTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTCACTCCTGAAAAGATATCAAAAAGCAAGAGATTCATGTCAAAGCTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGACTACAAAAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATGGATATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTGAATAGGCCAAACTTATTTTATATGGTGAAGGAAAAATCATCTGTTGGAAAGGTGGTTATTGATGAAATTGCTGAGTTCATTAAAGAATCTTATCCAAATAATGAATCAGGAATTGTATATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGAGGAATTAAAGCCAATTTCTATCATGCAGATATGGATGTAAATGCTCGAGAAAAAGTACATATGTGGTGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACAGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACTTACTATCAGGAAAGTGGTCGAGCTGGACGAGATGGACTTCCTTCTGAATGTCTACTATACTTTAGACCTGCTGATGTTCCACGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAACTTGTATGACATTGTACGATATTGTCAGTCCAAACGACAATGCCGACGAGCTGCCTTTTTCCGGCATTTTGCTGAGCCTCTGCAAGAGTGCAATGGGATGTGTGACAACTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCGCGACACGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAGAGGACAACAATGTTGCAATTAGTTGAAAAAATGAAAGTGAAGCAAAAGGAACTAGGTTCGGATTTGAAAAAAGAGGAAATTGAGCAGCTCATCTTACATCTATTGCTGGAGCATGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCAACAAATGCTTACATTGCTTTAGGACCACTAACCAAGCCAATATTGCAAGGGAAGAAGGCTGTGAAGCTTGAGATTTATAGTGAGCAAAGAACTAAGGCTGCTGTAAGATCAGCGAAACGCAGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGTTGAGAAAAGAATTGTCTTCTGTTCATGGAGGAATATTACCACACTCTATCTTGTCCACCCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAAGTCACTAGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTATGGTAGTAGAATTCTTGAGCAGATTGAAAAATATTCTGATTTCAAGCCAGATGATCAGCAAGAAAGTGGTGCTAGTGCTGCTAAGAGATCAAGGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2118 0.4093 MEDEQTNEILQELLKVEVDIQDVQEQIRVLVERQEKLYEKKSELSAILEACRESGNEVNNGASISVENWSGEFQWDSQADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMDMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIKESYPNNESGIVYCFSRKECEQVAKELRERGIKANFYHADMDVNAREKVHMWWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRAAFFRHFAEPLQECNGMCDNCAFSSEVKEVDVSRHAKLMVSLLQDMQANDQRTTMLQLVEKMKVKQKELGSDLKKEEIEQLILHLLLEHVLKEEFQHTAYATNAYIALGPLTKPILQGKKAVKLEIYSEQRTKAAVRSAKRSLGSSGLELKLDELRKELSSVHGGILPHSILSTQQISLLSSQKPKSLEQLEKVIGKLKTEKYGSRILEQIEKYSDFKPDDQQESGASAAKRSRTKKNLVLIESSEDEA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0218 705 Gene3D - 283 479 IPR027417 -
Ahy5g0218 705 SMART RQC_2 487 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ahy5g0218 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 449 IPR001650 -
Ahy5g0218 705 MobiDBLite consensus disorder prediction 673 705 - -
Ahy5g0218 705 Pfam HRDC domain 607 666 IPR002121 GO:0003676
Ahy5g0218 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 11 681 - -
Ahy5g0218 705 CDD DEXHc_RecQ1 75 282 - -
Ahy5g0218 705 SMART ultradead3 88 291 IPR014001 -
Ahy5g0218 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 425 IPR027417 -
Ahy5g0218 705 SUPERFAMILY HRDC-like 607 672 IPR010997 GO:0000166|GO:0044237
Ahy5g0218 705 Pfam Helicase conserved C-terminal domain 304 409 IPR001650 -
Ahy5g0218 705 Gene3D - 47 282 IPR027417 -
Ahy5g0218 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 275 IPR014001 -
Ahy5g0218 705 CDD SF2_C_RecQ 283 419 - -
Ahy5g0218 705 Pfam RecQ zinc-binding 422 478 IPR032284 -
Ahy5g0218 705 Gene3D HRDC domain 602 672 IPR044876 -
Ahy5g0218 705 Pfam RQC domain 484 588 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ahy5g0218 705 Gene3D - 483 583 IPR036388 -
Ahy5g0218 705 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 85 510 IPR004589 GO:0004386|GO:0006310
Ahy5g0218 705 ProSiteProfiles HRDC domain profile. 598 677 IPR002121 GO:0003676
Ahy5g0218 705 SMART helicmild6 329 410 IPR001650 -
Ahy5g0218 705 PANTHER ATP-DEPENDENT DNA HELICASE Q1 11 681 - -
Ahy5g0218 705 Pfam DEAD/DEAH box helicase 94 262 IPR011545 GO:0003676|GO:0005524
Ahy5g0218 705 Coils Coil 13 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0218 Ahy-Chr5 2484840 2492307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0218 87 424 Eukaryotic Initiation Factors Gene Family AT3G19760 20.506 2.95e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0218 K10899 - gmx:100817635 1182.16