Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0173 ATGAGCGTTCCTCCACCTCACCCTCCTCTTCCGACAGCAGCGTCGATGACGTGGCAGGCGGCGCCGTTCACGGTGGCGCAGTGGCAGGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAAGCAGGACTCACCGTTCCACCGGACCTCCTCGTACCTATTCGGAGGAGCCTCCAGTTGATGTCTCAGAAGCTCTCACATCACTACCCATCTCTGGGGTTTTATGGGAAGAAGATAGATCCGGAGCCAGGGAGGTGCAGGAGGACCGATGGGAAGAAATGGAGGTGCTCCAGGGAAGCACACCCTGACTCTAAGTACTGCGACCGCCACATGATACGGCGTCGTTACCGTTCAAGAAAGCCTGTGGAATCATCAACTTCATCTCAGCAACAATCTCACTCTTCTGCTGCTGCTTCTGCTGCTACTGCTGCTTCTACTACCACCACCACTACTACTACTACTGCTGCTTCTGCTGCTAGTGCTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTTCTGGTTCCGGTGGAGCCTTCCACACACTCCCTTTGCACACCAATGGTACCCGTGAAGGTTTCACCCTTGGGAGCAGCAATAGTAGCAGCTTGCAAAACTTGCACATGGACCACCCTTTGTCACTTCCCAGTGAGGTTAGCAAGAAGGAGTACAGGTTTGCACTGAACTCCGATGTAGACGAGCACAACTTCTTGCAGAAAGATCTGGGAACTGTGAGATATCAAGGTTATGACTTCACCTCAGATGGCCTGTGGTCCATGCCTCACATCCCATCAAACACTGTTTCAGAGTCAAGAACTGGTTCTACCATGGTTGGAGACTGCTTCCAACAGCAAACAATTCGCGATGCTGATCTCTTAAACCTCAATGCTTCAGGGTCGAAGGAGCTCGTCTTTGGTAGCCAATTGAGTCCGTCGTCGTCTGGGTCTTTGAAACAGGAATATCAGTCCCCGCAGTCACTCTTCACTGACTGGCACTGGAAGAAGGATTTAGGCTCTGACGCCATATATCGGCCCCACAAAGATTTCAATTCAGATGCAAATGTTGATTGCAATGGTTCTTTGTAA 1089 0.5197 MSVPPPHPPLPTAASMTWQAAPFTVAQWQELEHQALIFKYLKAGLTVPPDLLVPIRRSLQLMSQKLSHHYPSLGFYGKKIDPEPGRCRRTDGKKWRCSREAHPDSKYCDRHMIRRRYRSRKPVESSTSSQQQSHSSAAASAATAASTTTTTTTTTAASAASAAGGGGGGGGGGASGSGGAFHTLPLHTNGTREGFTLGSSNSSSLQNLHMDHPLSLPSEVSKKEYRFALNSDVDEHNFLQKDLGTVRYQGYDFTSDGLWSMPHIPSNTVSESRTGSTMVGDCFQQQTIRDADLLNLNASGSKELVFGSQLSPSSSGSLKQEYQSPQSLFTDWHWKKDLGSDAIYRPHKDFNSDANVDCNGSL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0173 362 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Ahy5g0173 362 SMART QLQ_2 21 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy5g0173 362 MobiDBLite consensus disorder prediction 189 210 - -
Ahy5g0173 362 PANTHER GROWTH-REGULATING FACTOR 17 357 - -
Ahy5g0173 362 Pfam QLQ 22 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy5g0173 362 MobiDBLite consensus disorder prediction 81 111 - -
Ahy5g0173 362 PANTHER - 17 357 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ahy5g0173 362 ProSiteProfiles QLQ domain profile. 22 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy5g0173 362 MobiDBLite consensus disorder prediction 81 210 - -
Ahy5g0173 362 MobiDBLite consensus disorder prediction 123 160 - -
Ahy5g0173 362 Pfam WRC 82 124 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0173 Ahy-Chr5 2029554 2033048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0173 22 126 GRF Transcription Factor Family AT3G13960 60.177 5.14e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ahy5g0173 WRC 2.10E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0173 - - ahf:112747495 620.542