Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0155 ATGGGTCGCAAACACGACGCCGTTGTCGCAGCCGAACCAGTTGCCGTGCCATCACCAGCAGGAGAAGCCCCAAACAGTCCTAAACTCAAATCCGAAAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAACCAAGAACAAAACGGAACCGCTAGTCCCAAAAGAAAGCTCGACGAGATCCAGCCTCGAAACGCCGCCGAATCCGACAAGGGGAAAAAGAAGAAGAAGAAGCACAAGCGCGATTCGGAAGAGAACGTGGAGGAAACCAAAGCTGAATCCGTTGATGGAGCTGGCGGAGGCGGCGGAGGAGGAGATGAGTCGGTTACCGACGGGCATGTGGCGGTTACCGGGAAGAACGCCGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCTGGTTCGGGGCTGCCGGAAAACGTGCTGGAGTGCTGCAAGGGCTTCGAGAAGCCGTCGCCGATTCAGTCACGTGCATGGCCTTTCTTGTTGGACGGTCGTGATCTCATCGGAATCGCTGCAACTGGTTCAGGGAAGACGCTGGCGTTTGGGATTCCTGCCGTTATGCACGTTCTGAGCAAGCGGAAGAATAAAGCGGTGAAGGGTCGGAACCCTCTTTGCCTCGTGCTCTCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGTAAGTCTTGTGGTGTGGAGTCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCGTCACTGAAATCTGGCATCGACATTGTCATTGGAACTCCTGGTCGTATACAGGATTTGATTGAAATGGGTGTCTGTAGCCTAAAAGATGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTCGAACAAGTAGTCCGCTCTATACTGGGTCAGACATGCTCTGTTCGCCAAATGGTGATGTTTAGCGCTACTTGGCCCTTACCAGTTCATCAGTTAGCACAGGAGTTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCGAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTGCGCGTGATAACCGACTGGTTGCTTTACTGGAAAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGAGGTTGGAAGGTTGTGTCCATACATGGAGACAAAGCACAACATGATCGTACAAAGGCACTTTCATTATTCAAGAATGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGTGGATTGGATATTCCAGATGTTGAAGTTGTTATCAACTATAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGATCTGGTAAAAAGGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGACAAATTGTGCCAGATGCCCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCCCACTTTAAGGAAATTTCCGCTGATGCACCGAAGTCTCAAAAAATTACATTTGACAACTCTGACGAAGACTAA 1647 0.476 MGRKHDAVVAAEPVAVPSPAGEAPNSPKLKSEKKKKKHKNKDKHNQEQNGTASPKRKLDEIQPRNAAESDKGKKKKKKHKRDSEENVEETKAESVDGAGGGGGGGDESVTDGHVAVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKAVKGRNPLCLVLSPTRELAQQISDVMCDAGKSCGVESVCLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCSLKDVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDNRLVALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRSGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDED* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0155 548 Coils Coil 73 93 - -
Ahy5g0155 548 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 534 - -
Ahy5g0155 548 Coils Coil 29 49 - -
Ahy5g0155 548 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Ahy5g0155 548 CDD SF2_C_DEAD 350 482 - -
Ahy5g0155 548 PANTHER BNAA08G07020D PROTEIN 26 534 - -
Ahy5g0155 548 Pfam Helicase conserved C-terminal domain 364 473 IPR001650 -
Ahy5g0155 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 336 IPR014001 -
Ahy5g0155 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 486 IPR027417 -
Ahy5g0155 548 Gene3D - 69 339 IPR027417 -
Ahy5g0155 548 CDD DEADc 146 337 - -
Ahy5g0155 548 Pfam DEAD/DEAH box helicase 153 322 IPR011545 GO:0003676|GO:0005524
Ahy5g0155 548 SMART helicmild6 392 473 IPR001650 -
Ahy5g0155 548 MobiDBLite consensus disorder prediction 1 113 - -
Ahy5g0155 548 SMART ultradead3 147 353 IPR014001 -
Ahy5g0155 548 MobiDBLite consensus disorder prediction 43 70 - -
Ahy5g0155 548 Gene3D - 340 515 IPR027417 -
Ahy5g0155 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 512 IPR001650 -
Ahy5g0155 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 156 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0155 Ahy-Chr5 1884679 1889402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0155 128 481 Eukaryotic Initiation Factors Gene Family AT3G19760 34.551 9.13e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0155 K14811 - gmx:100305353 868.996