Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0142 ATGTCGTTGTCGAAGAGTGCAATGGATGTTGACTCGGAACCACTCAGTTCACAAGACAACGTCGAAGATCCCATGATGACTAGTGTGGAAGAAAATGTTAACTGCACTTGTGATTGTGGTGGCAGCAGTAGTAAGTGTGTGACTGTGACGGCCGATGATATTATAAACCAGACTTTTGAAACATTAGATGCAGCTTATAACTTGTATGTACGTTATGCGAGGTGTCTCGGGTTTGGAGTTCGCAAGGGTGATACAGCACGTGGAAAAGATGGAACACAGCGCAGAAGGAGGTTTTTTTGCAGCAAGGAAGGAAAGAGAGCCGAGAAATACATATCTAGTTTGAGTAGGAAGCGGGAGCATAGAGCGCTGACTCGCACTAGTTGTGAAGCCATGCTTGCGGTGTATCTTGACACTAAAACTTCGACTTGGAGGGTTAAAAAATTAGTTGAGAAGCACAACCACGATCTTGTCCCACAATGCTTGGTACACCTAATTCCAAACCACCGAGGGTTGACTGAGCCACAAAAAGCTCAGGCGAATACCATGCATGATCATGGTCTTCCAACCTCTAAAATAATGGGACTAATGGTAGGCCAAGCCGGTGGTTATGCCAATGTCGGGTTCACAAAGAAGGACCTAGATAATCACTTTCAAAGAGCTCGTCGTGCAATGCTCATTGGTGGGGATTCCAATGCGACGATTAGCTATCTACTTGGGAAAGCAGATGTCGACCCGATGGCCATGACAAGGTACAGTGCTACTGATGAAGGTCGGCTGGCAAATTTATTTTGGGCAGATGGCATTTGTAGGTCCGATTATCAGTGCTTTGGAGATGTGCTTGCATTCGATACAACCTACCGGAAGAATAAGTACAGAAGGCCCTTGGTAATCTTCTCAGGTTGTAACCATCATCGCCAAACATGTATATTTGGTTTTGCCTTGGTAGAGGACGAACGGACTGCAACATATACGTGGTTGTTGCAAAACTTTCTAGAAGTCATGCTGAACAAGTCTCCTAGTGTTGTGGTCACAGACGGTGATGAAGCAATGAAGGCAGCAATTCGAGAAATCTTCCCAGATGCAACTCACCGATTATGTGGTTGGCACATTCAGAAGAATGTAACGGCAAACATAAAAAACAAAAATTTTTCCAACGACTTCAGAAGATGTTTGTATGCTCCATGGCATCCGGAAGAATTTGAAGAATATTGGGAGAATATGATAAAAAAATATGGGTTGGAGGAAAATGAATGGGTTCTGAGTGAATATGAGAAGAGGAAAAGTTGGGCAAGCGCTTACTTGAGGGATAAATTCTGTGCTGGATTTAGAACAACATCAAGGTGTGAGGCGATAAACAACTTCATTAAGAGGTTTATTGGCATTCGCCAAAGTCTTCTAGAGTTGGTCCAAAATCTTGAACATGCTCTTAGGGACTATAGAAACAATGAATTAGTTTCTCAATTTAAGACGCTGTATGGGGAGCCCGTTCTAACTACTGGGCTAGAAGCGTTGGAGCTTTCTGCTGCCAATTTTTACACTAGGGAGATTCTTGGAGATGTAAAAAAGGAGATTCAAGGAGTAGTCGCATTAGATGTAATAAATGAGGAAAACATATCAACCACTGTTGTGTTAAAAGTTAAGGAGTGTGACAGGAGACAACATACTTATAACGTACTTTACGATCGCAATACTGAGCATATGGAGTGTGAATGTAGTCGGTGGAGTAGTGAAGGCATTCCTTGCAGGCACATGTTTTGTGCAATGAAAAGGGTAGGTTTACAGAAGTTGCCAGATAGTCTTCTTTTGAGAAGATGGTCGAAGGATGCCAAGAAGTATCTGGATGAAAGTTCTGCTGGAGGCACTACGCAAGACAGAGAAAGAGAATTTTTGATGCGCTATGGCGCATTGTCAGTGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTATATCGTTGGACCCAAACACTAGAACAAAAATCTGACTTGAAAAGACAAACAACAGATTCTACCACGCCAAACTTTGTTGGTGACCCTTCGGTGGTCAAGACAAAAGGAGCACCCAAGGGGAAAAAGGAGAGGGGTAAACGGAGGTGCACTAAATGCAACAGTGCTGGTCATGTAAAGAATAAATGTCCTATGAGGAATGATGATGACAATTTGGGGGATAAGACTGGTAATGGCGCGCAAGCTAGCTTTGGTACCAAGGAGCTTCCCAAGGACCCTATGGCTTTTCAAGAGACATTAGCAGTGCCAAATACAGAAGTAAATGTACCTGTGCAGCAAGAGTCTGGGCTAGGTGATTCAGGATTGATTAATGGCCATGAGAATCCCATCCCACCGTATGGAAGTCATCAGTGGCTATTACAGGTTGTACAACAAGGACATTATTCGAAGTTCAATGGGATGCAGTAG 2448 0.4342 MSLSKSAMDVDSEPLSSQDNVEDPMMTSVEENVNCTCDCGGSSSKCVTVTADDIINQTFETLDAAYNLYVRYARCLGFGVRKGDTARGKDGTQRRRRFFCSKEGKRAEKYISSLSRKREHRALTRTSCEAMLAVYLDTKTSTWRVKKLVEKHNHDLVPQCLVHLIPNHRGLTEPQKAQANTMHDHGLPTSKIMGLMVGQAGGYANVGFTKKDLDNHFQRARRAMLIGGDSNATISYLLGKADVDPMAMTRYSATDEGRLANLFWADGICRSDYQCFGDVLAFDTTYRKNKYRRPLVIFSGCNHHRQTCIFGFALVEDERTATYTWLLQNFLEVMLNKSPSVVVTDGDEAMKAAIREIFPDATHRLCGWHIQKNVTANIKNKNFSNDFRRCLYAPWHPEEFEEYWENMIKKYGLEENEWVLSEYEKRKSWASAYLRDKFCAGFRTTSRCEAINNFIKRFIGIRQSLLELVQNLEHALRDYRNNELVSQFKTLYGEPVLTTGLEALELSAANFYTREILGDVKKEIQGVVALDVINEENISTTVVLKVKECDRRQHTYNVLYDRNTEHMECECSRWSSEGIPCRHMFCAMKRVGLQKLPDSLLLRRWSKDAKKYLDESSAGGTTQDREREFLMRYGALSVAATWMVFLGAQDGPSFHDTMNEVYRWTQTLEQKSDLKRQTTDSTTPNFVGDPSVVKTKGAPKGKKERGKRRCTKCNSAGHVKNKCPMRNDDDNLGDKTGNGAQASFGTKELPKDPMAFQETLAVPNTEVNVPVQQESGLGDSGLINGHENPIPPYGSHQWLLQVVQQGHYSKFNGMQ* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0142 815 MobiDBLite consensus disorder prediction 673 748 - -
Ahy5g0142 815 ProSiteProfiles Zinc finger CCHC-type profile. 708 724 IPR001878 GO:0003676|GO:0008270
Ahy5g0142 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 625 IPR031052 GO:0006355
Ahy5g0142 815 Pfam MULE transposase domain 279 373 IPR018289 -
Ahy5g0142 815 SMART 26again6 567 594 IPR006564 GO:0008270
Ahy5g0142 815 Coils Coil 462 482 - -
Ahy5g0142 815 SUPERFAMILY Retrovirus zinc finger-like domains 699 728 IPR036875 GO:0003676|GO:0008270
Ahy5g0142 815 MobiDBLite consensus disorder prediction 1 23 - -
Ahy5g0142 815 ProSiteProfiles Zinc finger SWIM-type profile. 556 592 IPR007527 GO:0008270
Ahy5g0142 815 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 57 625 - -
Ahy5g0142 815 MobiDBLite consensus disorder prediction 700 715 - -
Ahy5g0142 815 Pfam FAR1 DNA-binding domain 68 158 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0142 Ahy-Chr5 1766680 1775227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy5g0142 MULE 7.70E-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0142 - - ahf:112717474 1615.51