Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0133 ATGCCGCCGCTCGCTGATTGTCGCTTCTTCAGATTCATAATCCCCAACATGGAGAATCAAATTAGATTGCCGGTGGCCTTCTCCAACGTTGTACGGGATAACATGAGCAACCCCGTCGAGGTAATCACAACAAACGGTCAGTCGTGGAGCATCTCGTGGTTTGTGGAGGAGGAGCATCCGCATCAAGTCGTTTTCACCGGAGGCTGGCGAGCCTTTTACAAACACTACCACCTACGAATCGGTGACTCAATGCTGCTATCGTATCACCAACCCAAGTTTTTCTATGCGGCCATCCACGACACAACATACTTTGAGATCAACTACGGAAGAAACTTGAGAAACGGAAGTCTTCCGGCAATACCCGCACATGGCAACTATGCAGTCCAGTTCTTCGCGATAATCCCGGTGAACGACCTTGATACACTGAAACTCCCGCTACGGTTCTCCCGGGAATATGGCCGGTCCCTACCGCGACCACTGACCCTAACCACGCCTACAGGACATCGTCATCGCGTGGGGTGGAATATGCAACCTAATGGGAGGATCGTGCTTCATGGAGGATGGGACGGTGTCCGGGCACGCTATGGCCTAAGGGATCAGTGGCTTGTGCTGTTCCGTTACCATGCCCTTCAGAACACAATGTACGTCATGTTCTTCAACGGTCACACAATGGAAATCAACTACTTGGCCCATGCCGGCCCCGGGACGGACTCCACTTGTATAACCGATCCGTCGGCCCCCAGGTCAAGGCACATAGCCGATGGGTTCAGATCGACCAATCCGTTCTTTGTAATTCCAATCATGCACCGCCTGGCAAACCGTTTTCTCCCGAATGTCCCCCCTCTGCCGGGAGTATGCGAGGATAGCCCAATTACGATTACCAACGACAGGGGCGCGTGGACCATTCGGTTTACGCACTACGTCGGGAGGACGAACGGATGCTTTGGAATTGGCTGGTCTGCCTTAGCAACTGCATGCCAACTAAGACACGGCCATGTTTGTGTCTTCGAATGGCTTGTGCCGCAAGAATACCGGCTGCATGAATACAATTCTACCTTCCCCTCATTAGCTTATGTTTTGGATGATAAACACGATTATCGTTTCTGTCGTTAA 1113 0.5193 MPPLADCRFFRFIIPNMENQIRLPVAFSNVVRDNMSNPVEVITTNGQSWSISWFVEEEHPHQVVFTGGWRAFYKHYHLRIGDSMLLSYHQPKFFYAAIHDTTYFEINYGRNLRNGSLPAIPAHGNYAVQFFAIIPVNDLDTLKLPLRFSREYGRSLPRPLTLTTPTGHRHRVGWNMQPNGRIVLHGGWDGVRARYGLRDQWLVLFRYHALQNTMYVMFFNGHTMEINYLAHAGPGTDSTCITDPSAPRSRHIADGFRSTNPFFVIPIMHRLANRFLPNVPPLPGVCEDSPITITNDRGAWTIRFTHYVGRTNGCFGIGWSALATACQLRHGHVCVFEWLVPQEYRLHEYNSTFPSLAYVLDDKHDYRFCR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0133 370 Pfam B3 DNA binding domain 18 90 IPR003340 GO:0003677
Ahy5g0133 370 PANTHER B3 DOMAIN-CONTAINING 124 231 - -
Ahy5g0133 370 CDD B3_DNA 136 220 IPR003340 GO:0003677
Ahy5g0133 370 SUPERFAMILY DNA-binding pseudobarrel domain 9 108 IPR015300 -
Ahy5g0133 370 SUPERFAMILY DNA-binding pseudobarrel domain 130 219 IPR015300 -
Ahy5g0133 370 CDD B3_DNA 8 88 IPR003340 GO:0003677
Ahy5g0133 370 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 109 - -
Ahy5g0133 370 ProSiteProfiles B3 DNA-binding domain profile. 6 102 IPR003340 GO:0003677
Ahy5g0133 370 PANTHER B3 DOMAIN-CONTAINING 8 109 - -
Ahy5g0133 370 Gene3D - 241 349 IPR015300 -
Ahy5g0133 370 SMART B3_2 9 102 IPR003340 GO:0003677
Ahy5g0133 370 SMART B3_2 130 222 IPR003340 GO:0003677
Ahy5g0133 370 SMART B3_2 262 352 IPR003340 GO:0003677
Ahy5g0133 370 Gene3D - 5 103 IPR015300 -
Ahy5g0133 370 Gene3D - 125 222 IPR015300 -
Ahy5g0133 370 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 124 231 - -
Ahy5g0133 370 SUPERFAMILY DNA-binding pseudobarrel domain 258 351 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0133 Ahy-Chr5 1588520 1590128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0133 142 250 REM Transcription Factor Family AT4G33280 26.549 2.17e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy5g0133 B3 1.00E-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0133 - - ahf:112746889 780.015