Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0130 ATGTATAACTTGTTCCTTTCATTATGTTTGGTTGCCATGATACCAATCTTGAAAGCTAATATCTTAGAGAATACAACATACCTGAATGATTTTGATGAGGAATATTGGAAGGAAAGAGCAGCAATTGCTGAAAAAGATAACAGAGAAGCATATTTCTTAAATCCATACGAGATTTCTGGCAACTTCAGTTCTACTGTTTTAGAAGACATAGTTGGAAACAAACATGCGAGAAGAAGCTTGAAGGGTAAAAATGCAAGAGTTCCATGCATGGCAACAAACAACATTGATAGATGTTGGAGGTGTGATCCTAATTGGGCAAAGTATCGTCAAAAGCTTGCAAATTGTGTTCAAGGTTTTGGAAAAAACACAATTGGTGGAAAAAATGGTCCAATTTATATAGTTACTGATTCCTCAGACAATGACATGGTTAATCCAAAACCAGGTACTCTTCGCCATGCAGTCACAAGAACAGGGCCATTATGGATTATCTTTGCACGTAGCATGTTTATTAGACTCAACCAAGAACTCATAATGACTAGTGACAAAACTATTGATGGAAGAGGAGTTGATGTTCACATTACTAGAGGTGCAGGAATCACCATTCAGAACATTAAAAATGTGATTATTCATGGAATTAAGATTTATAATATTGTTCCTGGTACCGGTGGACTTATCAGAGATTCTGAGACTCATTTTGGTCAAAGGTTAAGCACAGAAGGTGATGGAATCTCTATTTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCTATGAGAAAATGTGCAGATGGTCTCATTGATGCCATTATGGGATCTACAGCCATTACCATTTCTAATAGTCATTTCACAGATCAAAATCACGTTATCCTGTTTGGTGGGAGGGAAGAGCACACAATTGATAAGATGATGCAAGTGACTGTAGCTTTCAATCATTTTGGGAAGAGATTGCTGCAAAGAATGCCAAGGTGCAGATTTGGATTTTTCCATATTGCTAACAATGATTATACTCATTGGCAAATGTATGCCATTGGTGGTAACAAGAATCCAACTATTATTAGTGAGGGCAATCGATTTTGGGCTCCGGATAATATTCATGCTAAAGAGGTAACAAAGAGAGTGGACGCAAATATTGGAGAATGGAAATCATGGCAGTGGAGATCAATAAATGATGAGTTATTGAATGGAGCATTTTTCGTACAATCGGGATCTGAGTTGGTAAATTGGTCAAACAAAAATAAGATTGCATCAAAACCTGGAAAATATGTCGCACAACTTACTCGCTTTGCTGGCACCCTTAGATGTAGAGTTGGTAAACCTTGTTAG 1323 0.3711 MYNLFLSLCLVAMIPILKANILENTTYLNDFDEEYWKERAAIAEKDNREAYFLNPYEISGNFSSTVLEDIVGNKHARRSLKGKNARVPCMATNNIDRCWRCDPNWAKYRQKLANCVQGFGKNTIGGKNGPIYIVTDSSDNDMVNPKPGTLRHAVTRTGPLWIIFARSMFIRLNQELIMTSDKTIDGRGVDVHITRGAGITIQNIKNVIIHGIKIYNIVPGTGGLIRDSETHFGQRLSTEGDGISIFGSSNIWIDHVSMRKCADGLIDAIMGSTAITISNSHFTDQNHVILFGGREEHTIDKMMQVTVAFNHFGKRLLQRMPRCRFGFFHIANNDYTHWQMYAIGGNKNPTIISEGNRFWAPDNIHAKEVTKRVDANIGEWKSWQWRSINDELLNGAFFVQSGSELVNWSNKNKIASKPGKYVAQLTRFAGTLRCRVGKPC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0130 440 Pfam Pectate lyase, N terminus 30 80 IPR007524 GO:0030570
Ahy5g0130 440 PANTHER PECTATE LYASE 4 440 - -
Ahy5g0130 440 SUPERFAMILY Pectin lyase-like 83 434 IPR011050 -
Ahy5g0130 440 Pfam Pectate lyase 177 358 IPR002022 -
Ahy5g0130 440 SMART amb_all 167 364 IPR002022 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Ahy5g0130 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Ahy5g0130 440 PANTHER PECTATE LYASE 18-RELATED 4 440 IPR045032 GO:0030570
Ahy5g0130 440 Gene3D - 92 433 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0130 Ahy-Chr5 1574458 1576370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0130 4 440 Polysaccharide Lyase AT1G14420 56.923 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0130 K01728 - gmx:100796307 632.484