Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0107 ATGTCAACCAGAAAGACCAGAGGAGGCAGAAACCACCGTAATCACCACCGTACCCCTCACCACGACGACGACGACTCCTTCACTCCAAAGCCTCTCTACCAACAACATCATCATCAGCAGCAGCATTCCACTCCTCCGACTCACCACCGCCACGGCCACCACAACCATTATCAACAACCAAAATTGCGTTTCGTCAAGAAATCAGAACTTGATTCTTCTGCTTCTGATTCCCTCCTTACCTCCGATCCTGTGGCGGTGCCTGCTGCTGATCACGTGACACCGCTACCACACGAGAACCACAAACAAGAAGAGAACAACAACAACAACAACAACATCAGTGTCAGTGATGCTGTGACAGTAACAAGAGAGGTAGATCACAAGGCTTGTTCGAGCAACAGCAAGGAGGTGGATGACGACGATGCCGATGATTATGTTGTGAATAGGCTTCGTAGGTTATTGGATGCGGTGGAAGAGCCTGCGTTAATGGAGCAGCAGCTCAGTACCAATGACCAATTGCAGGAAGATGAGTTACTTGTGGTGGAGTCGATATACGGAGAAAATGTTAACAAGCTTGAAAGCTGGAAAGGCCTCCGTTGTTTTCAGATCCAAATACACATCGAAGTTTTGGGTGAAATTGCCATTATTGCTAAGCTGAACTCTTCTAATGAACTTGATGTTGCAAGCGGCAATTCGGATGACTTCTTTTACTCTTTCAAAGTTCAGTATCTTCCACCAATCGTTTTGACCTGCTTATTGCCCAAGTCATATCCAAGCCACCAACCACCTTTGTTTACTGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTTCTCTTTCTCACCTGGGATTTGATAAGGAAATTATCCTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGAGCGTGTTGTTTCAGGTTCCATATCCCTTGATGCTGCTATTCCTTTCTTGCGAGGTTACAATAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGCATTTGCTTTAGCGAATATCCAGGTACCGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTATGAGCGCTGGGAATCCATGATGCTGGAGAGAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGGTGTGAAACACCTTGCATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTATTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGACCGTCAAAATTCGTCCCAATTAAAGGAAGATCAAAAGCTACGGGAACGGGAGAAGATCAATGAAATGCTTAGTATGAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAACCGAACTGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGGAGCATACTTTTGTTACCGTTGCAACAAATTAATTGATCCATCAGACCCATATGGGCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGCATTAACCATCGCCAGGTCGTAGGACAACTACAGGCTGAACTCTTTCGGGAACGCGGCCTGCCCTGTCCTAACTGTCGTCAGTTCAATGCAAAGGTCGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAAATTGTGAGGCGCGGGTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACTGAGGGGTAA 2019 0.4443 MSTRKTRGGRNHRNHHRTPHHDDDDSFTPKPLYQQHHHQQQHSTPPTHHRHGHHNHYQQPKLRFVKKSELDSSASDSLLTSDPVAVPAADHVTPLPHENHKQEENNNNNNNISVSDAVTVTREVDHKACSSNSKEVDDDDADDYVVNRLRRLLDAVEEPALMEQQLSTNDQLQEDELLVVESIYGENVNKLESWKGLRCFQIQIHIEVLGEIAIIAKLNSSNELDVASGNSDDFFYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSSLSHLGFDKEIILGRNGVNCVGDERVVSGSISLDAAIPFLRGYNKERHNENFLKELHECSICFSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISNLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCSKCYFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSMKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCGAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFRERGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0107 672 MobiDBLite consensus disorder prediction 42 57 - -
Ahy5g0107 672 MobiDBLite consensus disorder prediction 1 57 - -
Ahy5g0107 672 Pfam zinc-RING finger domain 364 411 IPR001841 -
Ahy5g0107 672 SUPERFAMILY RING/U-box 524 580 - -
Ahy5g0107 672 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 138 611 IPR031127 GO:0004842|GO:0016567
Ahy5g0107 672 SMART ring_2 621 650 IPR001841 -
Ahy5g0107 672 SMART ring_2 453 541 IPR001841 -
Ahy5g0107 672 SMART ring_2 365 412 IPR001841 -
Ahy5g0107 672 SUPERFAMILY UBC-like 166 305 IPR016135 -
Ahy5g0107 672 SMART RWD2001b 175 310 IPR006575 GO:0005515
Ahy5g0107 672 Pfam IBR domain, a half RING-finger domain 528 570 IPR002867 -
Ahy5g0107 672 Pfam IBR domain, a half RING-finger domain 433 491 IPR002867 -
Ahy5g0107 672 SUPERFAMILY RING/U-box 360 445 - -
Ahy5g0107 672 SMART ibrneu5 433 491 IPR002867 -
Ahy5g0107 672 SMART ibrneu5 520 585 IPR002867 -
Ahy5g0107 672 Pfam RWD domain 171 306 IPR006575 GO:0005515
Ahy5g0107 672 SUPERFAMILY RING/U-box 613 669 - -
Ahy5g0107 672 MobiDBLite consensus disorder prediction 17 31 - -
Ahy5g0107 672 Gene3D Ubiquitin Conjugating Enzyme 161 312 IPR016135 -
Ahy5g0107 672 MobiDBLite consensus disorder prediction 1 16 - -
Ahy5g0107 672 ProSiteProfiles Zinc finger RING-type profile. 365 413 IPR001841 -
Ahy5g0107 672 ProSiteProfiles TRIAD supradomain profile. 361 590 IPR044066 -
Ahy5g0107 672 Gene3D - 505 612 - -
Ahy5g0107 672 ProSiteProfiles RWD domain profile. 175 310 IPR006575 GO:0005515
Ahy5g0107 672 SUPERFAMILY RING/U-box 433 496 - -
Ahy5g0107 672 ProSitePatterns Zinc finger RING-type signature. 382 391 IPR017907 -
Ahy5g0107 672 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 138 611 - -
Ahy5g0107 672 MobiDBLite consensus disorder prediction 89 112 - -
Ahy5g0107 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 448 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0107 Ahy-Chr5 1246018 1249958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0107 360 593 ARIADNE family AT3G27710 24.793 6.60e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0107 K11971 - gmx:100500662 924.465