Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0100 ATGGGAAAAAAGAAACCAAAGGACCCTCCACAAACCGACTTAGCTTCGCCCCGTCCCGCCGCCGGCATTTTCTCCTCGCTCTTTGCCGCCGCACCGGAACCAAGCACCGCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCACTCAACCTTCTCAGGAATCAAACGAACAAACTCAAATCCCTAACAATGTCGGATCCGCACAACACGACACCGGCGAGGAGAAGAGGAAAAGGAAAACCTTAGAGGAGAAGCCCTCCGCCGATTCCGCAATCGAAGCTTCGGGGAAGAAGAGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCAATTGAAAAGAACGATGAGGGGAAGGAGAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTATGGTGCGGTGGTGGATGAAGAAAAAGAAGCGTCTGTGTTGGAGAACGGAAAAGTTGGGAACAAGAGGAAGTTGCTGCATAACCCTGCTGATATGATGGTATCGAAGGAAGGGTTTGATGATGAGGAGAAGCTCTTGAGAACGGTATTCGTTGGAAATTTGCCTCTCAAGGTGAAGAAGAAGACCCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAATCCGTGAGGATTCGTTCTGTTCCGATACAAGACACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCCTACATTGTTTTCAAAACGGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCATATTCGTGTTGATAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGAGAGTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAATTATATCAGTTATTTTGTAGCATACCTAACCTGGGAACCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTCTGCACTCAAGAAACGGAACCTGAAGCTTCGAGACCGAGAATTACGACTCAGTCATGCCAAGGCTGATTCCACTCCATCGAAAAAGCCAAAGCCAAAGCCAAAGCCATCACCAGCACAAGCTCCTGGCACCCCGGCCAAGAGAAAGTCTCTGGCTATGACGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATTCAATGCATCTTACCAGGGTTTGCGTGCAACAAAATCTGATTTCAAGAAGAAAGCTCATGGAGTAGAAAAATCAAAAGGACGCTCGGAGAAACGACCATCAGTTGCTGCCAGAAAAGCCAAAGCAAAAATGCTCAAAGAAAGTGGTTCATCAAAACAAGCTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAAATAAGAAGGTGAAGAAGAATAGGTAG 1524 0.4652 MGKKKPKDPPQTDLASPRPAAGIFSSLFAAAPEPSTALASLFSDDNPFRRKPTQPSQESNEQTQIPNNVGSAQHDTGEEKRKRKTLEEKPSADSAIEASGKKRKYHESIEEAKGSDLAIEKNDEGKEKKKKKRKREELEKEWEERKYGAVVDEEKEASVLENGKVGNKRKLLHNPADMMVSKEGFDDEEKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGTSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSALKKRNLKLRDRELRLSHAKADSTPSKKPKPKPKPSPAQAPGTPAKRKSLAMTSPSSSINRSNKKFNASYQGLRATKSDFKKKAHGVEKSKGRSEKRPSVAARKAKAKMLKESGSSKQAGMKRKLDSRTPDSSFRNKKVKKNR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0100 507 Gene3D - 295 393 IPR012677 -
Ahy5g0100 507 CDD RRM2_RBM34 305 381 IPR034221 -
Ahy5g0100 507 MobiDBLite consensus disorder prediction 38 139 - -
Ahy5g0100 507 MobiDBLite consensus disorder prediction 413 438 - -
Ahy5g0100 507 MobiDBLite consensus disorder prediction 1 20 - -
Ahy5g0100 507 Coils Coil 501 507 - -
Ahy5g0100 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 237 IPR000504 GO:0003723
Ahy5g0100 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 378 IPR000504 GO:0003723
Ahy5g0100 507 MobiDBLite consensus disorder prediction 375 507 - -
Ahy5g0100 507 PANTHER RNA-BINDING PROTEIN 34 43 505 - -
Ahy5g0100 507 SUPERFAMILY RNA-binding domain, RBD 185 293 IPR035979 GO:0003676
Ahy5g0100 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
Ahy5g0100 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Ahy5g0100 507 MobiDBLite consensus disorder prediction 39 73 - -
Ahy5g0100 507 MobiDBLite consensus disorder prediction 375 393 - -
Ahy5g0100 507 SUPERFAMILY RNA-binding domain, RBD 303 446 IPR035979 GO:0003676
Ahy5g0100 507 MobiDBLite consensus disorder prediction 74 139 - -
Ahy5g0100 507 Gene3D - 188 292 IPR012677 -
Ahy5g0100 507 MobiDBLite consensus disorder prediction 440 501 - -
Ahy5g0100 507 Coils Coil 121 146 - -
Ahy5g0100 507 SMART rrm1_1 305 381 IPR000504 GO:0003723
Ahy5g0100 507 SMART rrm1_1 194 283 IPR000504 GO:0003723
Ahy5g0100 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 43 505 - -
Ahy5g0100 507 CDD RRM1_RBM34 193 283 IPR034220 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0100 Ahy-Chr5 1127031 1130225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0100 195 384 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 5.75e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0100 K14837 - gmx:100809622 602.823