Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0094 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATACAGTGTACCCTCCACCTCCTCCTCCTCCATTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTTCTCCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGCAGAACATGAAGAAGAAGTAACAAATGTTGAGATTTTGGAAGACAACCACAACCCTTCACTCCATGAGCCATGGCATGCCTCAACAACTGGTCTAGATGAGGCACTCATCAAGACCATAACTGTTTGCAAGTACAAGAAAGGCGAAGGACTCGTTGAGGTAACGGATTGTTCCGTTTGCCTCAGCGAGTTCCAAGATGGCGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCTTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCACGCCACGCTTTTCACCTTCAATGCTGCAGTGCCATTTCATGCGCTGCCGCCGGCACCCCAGGTGTTGGAACTACCTTCTTCAGCAAGAAATGAAGGTTCTTCTGAGAATGTGGTTCATGTAGATGAAAATGTGGATAATGGAACAAGGGAGAGTGATGAGTTATTGGATGTGGTGTTGGACGAAGGTGCACTGAATGGTAACAGAGAAGTTCCAAAGACTAATAATGCATTCAGAGCTTTCAGTGACTTGGGGAATTTGAGGGGAAGGCATGCTGAGCTTAGAGATGAGGATTACTATGAATCAATAAGAAGATCAGTGTCTATGGACCATTCCTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAATCATGATCAAGATTCAAATGAAGAAGTTGGCACTTCAAAGAGATCATCATCATCAATGGGTGAAAGTAGCAAATCAAGCTATAGAAGAAGGGTGTTGCATTGTGTTCTGAGTCCAATTTCAATGAAGAGATCATTCTCAGGTGGAAGATTCTCTCTTAGTGGAAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTTTATGA 1149 0.4378 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYTVYPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSAEHEEEVTNVEILEDNHNPSLHEPWHASTTGLDEALIKTITVCKYKKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHILCIDTWLKSHSNCPLCHATLFTFNAAVPFHALPPAPQVLELPSSARNEGSSENVVHVDENVDNGTRESDELLDVVLDEGALNGNREVPKTNNAFRAFSDLGNLRGRHAELRDEDYYESIRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEVGTSKRSSSSMGESSKSSYRRRVLHCVLSPISMKRSFSGGRFSLSGRNGRGRQGILPL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0094 382 SMART ring_2 147 188 IPR001841 -
Ahy5g0094 382 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Ahy5g0094 382 CDD RING-H2_PA-TM-RING 146 188 - -
Ahy5g0094 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Ahy5g0094 382 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 372 - -
Ahy5g0094 382 MobiDBLite consensus disorder prediction 363 382 - -
Ahy5g0094 382 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 372 IPR044675 -
Ahy5g0094 382 MobiDBLite consensus disorder prediction 317 341 - -
Ahy5g0094 382 MobiDBLite consensus disorder prediction 326 341 - -
Ahy5g0094 382 Pfam Ring finger domain 146 188 IPR001841 -
Ahy5g0094 382 SUPERFAMILY RING/U-box 146 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0094 Ahy-Chr5 1080643 1082680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0094 1 339 C3H Transcription Factor Family AT3G03550 41.026 3.43e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0094 - - adu:107487194 721.465