Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0093 ATGGCAGCAACATTAGAGTCAGCACTCTCCATATTTGCATCTCACTCTCACCGTTTCTCCAACAACAACACTCGTCTCTCTCCAAACCTCTCTTCTCTCTCCTTCTCTTTCAATGCCTCCACACCAAGATCATTCTCCTTCCTCTGCTCCACATTGCAAGAAGCACAACCACACACACCTACAACTCAGGAACAACCCAAGAACGTGAAGAAGAAGCTCTATGTCTTCAACTTACCTTGGTCTATGTCCGTTGCTGACATCAAAGACCTGTTTAGCCAATGCGGAACTGTAACAGACGTCGAGATCATAAAGAACAAACAAGGCAAGAGCAGGGGTTTTGCCTTCGTTACTATGGCTTCAGGGGAAGAGGCTCTTGCTGTCGTTCACAAGTTCAATTCTCATCAAATATCAGGAAGGGAAATAAGGATAGAGCTTGCCAAGAGATTCAAGAAGCCGCCGCCTCCTCCTCCACCGTCTCCGAGTCCCCCTGCCGGCGAGACACGTCACGTGGTATATGTAGCCAACCTTGCATGGAAAGTAAGATCACCCGTTCTCAGACAATTCTTCACTGATAATTTCAAAACCCCAGTTTCGTCCAGGGTTGTCTTTGAGAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCAGAGGCTGCAATTTCTGCTTTGGATGGGAAGGAATTAATGGAGCGACCACTTCGTCTTAAGTTGAGTGAAAAGAAAGTCAAAGCAGCTCCAACTGAAAGGGATGAAGACCAAGCTCCTGAATTGGTGGATCAAGAGAAGCTCAAAGAAGCTGAAACTGAAAAGGAGGAAATCCATGATTCTGATGCTCAGCTGGAACAATCATAA 876 0.4646 MAATLESALSIFASHSHRFSNNNTRLSPNLSSLSFSFNASTPRSFSFLCSTLQEAQPHTPTTQEQPKNVKKKLYVFNLPWSMSVADIKDLFSQCGTVTDVEIIKNKQGKSRGFAFVTMASGEEALAVVHKFNSHQISGREIRIELAKRFKKPPPPPPPSPSPPAGETRHVVYVANLAWKVRSPVLRQFFTDNFKTPVSSRVVFESPAGRSAGYGFVSFLTKEDAEAAISALDGKELMERPLRLKLSEKKVKAAPTERDEDQAPELVDQEKLKEAETEKEEIHDSDAQLEQS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0093 291 MobiDBLite consensus disorder prediction 246 291 - -
Ahy5g0093 291 PANTHER OS02G0815200 PROTEIN 26 269 - -
Ahy5g0093 291 SMART rrm1_1 72 144 IPR000504 GO:0003723
Ahy5g0093 291 SMART rrm1_1 170 244 IPR000504 GO:0003723
Ahy5g0093 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 248 IPR000504 GO:0003723
Ahy5g0093 291 PANTHER CHLOROPLAST, PUTATIVE-RELATED 26 269 - -
Ahy5g0093 291 Coils Coil 271 291 - -
Ahy5g0093 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Ahy5g0093 291 SUPERFAMILY RNA-binding domain, RBD 152 252 IPR035979 GO:0003676
Ahy5g0093 291 Gene3D - 152 258 IPR012677 -
Ahy5g0093 291 Gene3D - 50 151 IPR012677 -
Ahy5g0093 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Ahy5g0093 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 242 IPR000504 GO:0003723
Ahy5g0093 291 SUPERFAMILY RNA-binding domain, RBD 55 152 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0093 Ahy-Chr5 1073150 1075587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0093 73 261 Eukaryotic Initiation Factors Gene Family AT4G34110 26.316 5.58e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0093 - - gmx:100793319 301.212