Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0064 ATGAAATTTAAGGTGGCTTCGACATGGACGAAGCTAGATCTACCTTCGTTTGGGGTGCCTGCCGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTTCAGCCCAATCTGCATTCTGTTCTGCAAGGTCTCTTTGGTACCTGGTCAAAGATATTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCACATGTCACTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATCATGGATAATCTTGGTGGTGATCGGTTGGATTCAACGGGAACTGTAGGTAATACAAGAGGAGGAGGATTGAATGAATGGCAACAAAAGAGATTTTCTAGTGATAATTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTCACAAAAGCCGTGAAATTCCTAGTACTAAGCTTTTATTGGTGGAGCAGCCTGGCAGAAATGGTTTTGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATGTGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAAGAAAAGGAAGTTATCTAATGATCTATCTAATCCTTCACAGTACCCCTTTACTATGGGGGCTGCTCCCCCTGCTGTCAATGCTCATGGCACTCGTCCTTCCGGCTTGAATACAGCATTTCCATTGCAAAAACGTCCTAATGTAGGTCATGGCCCAAATAAAACTCAGTTTATACATGACCAATTGCCTAATCAACCTGGACCAGTTTCCTCTAACCTGCAAAATCATGGACAAACACCTCAACTACAGTTTCTTCCACCTCAAATTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCTGGGCCAAAGTTTATATTTACATGGGGGAATCTTGCCACCTTTATGTTCAAGCCTCCCAACTGCTCCATCACAAACGATGTCTCATCCCCATGCTGATGCTTCAGTGACAAGTCAACCACCACCTGCATATCTTGATTTGCTTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCAATCCACCCGCCGGACTGGATTTCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCAGGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTGAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCAAGGTTGTTGGCTGCCGAGGAGACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGCTTTGATGAGTTTTACAGCCACGAAATGGAGGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCTTGGACAGACATCAACTAGGACCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACAGGGAACCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTGATTAGGACTTACTAA 1989 0.4449 MKFKVASTWTKLDLPSFGVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVTKPQSLQQMEHSSSIMDNLGGDRLDSTGTVGNTRGGGLNEWQQKRFSSDNWNIFQTSKTYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLVEQPGRNGFGSKFPLASWQDTEEEEFDWKDVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDLSNPSQYPFTMGAAPPAVNAHGTRPSGLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPVSSNLQNHGQTPQLQFLPPQIPSSTQISHGSSLQGHGASISTPISNPLPDMLGQSLYLHGGILPPLCSSLPTAPSQTMSHPHADASVTSQPPPAYLDLLSSLVNHGVISVTNPPTNPPAGLDFIGTEFDPDILKVRHEGVISALYGDLPRQCRSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPRLLAAEETEEMKDEEELGVPAEEDQSRCALCGEGFDEFYSHEMEEWMYRGATYLKAPMGTTLATLDRHQLGPIVHSKCRSDSDSTMPSTNREPTKRVVREKECGSTKHQFCAPLIRTY* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0064 662 Gene3D - 7 95 IPR008942 -
Ahy5g0064 662 ProSitePatterns Zinc finger C2H2 type domain signature. 486 506 IPR013087 -
Ahy5g0064 662 MobiDBLite consensus disorder prediction 253 279 - -
Ahy5g0064 662 MobiDBLite consensus disorder prediction 329 351 - -
Ahy5g0064 662 SUPERFAMILY ENTH/VHS domain 19 94 IPR008942 -
Ahy5g0064 662 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 21 627 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy5g0064 662 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 21 627 - -
Ahy5g0064 662 SMART 558neu5 2 93 IPR006569 -
Ahy5g0064 662 Pfam CID domain 19 86 IPR006569 -
Ahy5g0064 662 ProSiteProfiles CID domain profile. 1 96 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0064 Ahy-Chr5 668261 675054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0064 421 627 C2H2 Transcription Factor Family AT4G04885 59.135 1.48e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g0064 CID 1.40E-06 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0064 K14400 - aip:107640327 545.043