Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0001 ATGAGAATGTGGGAATGCCTACAACATGATGTCATTGGACTTTTAACTTCAGTTGGAGAAGAGAAAGAATATGCAAGAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTTATTCAACTTGCAAAAGTCAAGTTCTTTCGGGGTCAAGTTGGTCTTCAAAATGTCATGTATGCGACACAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGACTTCAGGCAGAGTATGATTGAGCAAGGTGGCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAGGTTCTCTCCTTGGAAGATGACTTCATGCGTCTAACTAGAAAGTGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATCTTTGGAGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCCATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTTACTCCAAGATTTAAAATTAAAGTGACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCCTATTTGCTTAAGAAATCATGTGCTGATTTGTTTACTGAAGTTCAAAGAGATGCAAGTGTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTGATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTACGAGAATTTGTGATGATTCCACCATCATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTTCTCCCAAAAAGGAGCATGACTTACACAAATCTGTTCCTGCTGGAAAAGCTGATGTTGGTATTAAGAAGGAGTCTTCTGATAGTTTTATCAAAACTGAGAAAGATGCTGGTGATTGTGCTGGGATGTTGTGTAAATTCCCAGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTATTTCTGTGGGGAGTGAATTTGTTGGGTTAATTGATGGTGAGCATGGAAAGGAAGAGAAAACTCCCAGCAATGATACTCTTAGTGATGATCTTTCTGCTGAAATCGATATATTGCTTAGCTCAACGGAAAAAGAAACTCAGGAGCTGTTGTCCCATGTTCTTGAAGCACCTTCCCAAAATGGAGAGAATCTTACCCATGAAAATCATGTTGTGACCTCCAAGAGTAAGAGAAATTTGAATCCTCAGTTTGAAGAGGTTGCTGTTGATGCAGATGGGCGTGGGTTGAAGGTTGCTAAGGTTAATGGAGTTTGA 1428 0.3957 MRMWECLQHDVIGLLTSVGEEKEYAREGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVDFRQSMIEQGGSGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIHPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASVICGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVTRICDDSTIIAMFELPNYDADDESSPKKEHDLHKSVPAGKADVGIKKESSDSFIKTEKDAGDCAGMLCKFPVLIDFLAEKQPVISVGSEFVGLIDGEHGKEEKTPSNDTLSDDLSAEIDILLSSTEKETQELLSHVLEAPSQNGENLTHENHVVTSKSKRNLNPQFEEVAVDADGRGLKVAKVNGV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0001 475 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Ahy5g0001 475 Gene3D - 5 120 IPR012340 -
Ahy5g0001 475 PANTHER REPLICATION FACTOR A 1, RFA1 12 242 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g0001 475 SUPERFAMILY Nucleic acid-binding proteins 144 276 IPR012340 -
Ahy5g0001 475 CDD RPA1_DBD_C 147 276 IPR013955 -
Ahy5g0001 475 Gene3D - 135 298 IPR012340 -
Ahy5g0001 475 Pfam Replication factor-A C terminal domain 163 247 IPR013955 -
Ahy5g0001 475 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 242 - -
Ahy5g0001 475 CDD RPA1_DBD_B_like 10 113 - -
Ahy5g0001 475 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0001 Ahy-Chr5 3437 11205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0001 10 241 Core DNA Replication Machinery Family AT5G08020 26.122 2.11e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0001 - - adu:107471135 911.753