Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g3088 ATGAGAGGTTTAATAGCAAGGCACCTTCACCTGTTGCCGTTCAATCGGAGGATCACCACTAACATCACCACCATCACCATGTCGGCATCATCATCTGCTCTCAGCACACCCAGATTGGTCCTCAAGAAGGTTCTGGCCAAGTCTCAACGCGAAGGCGATGGGGCTGTTGTCAGAAGAGGCATTGGAAGAAGCGAGTTGAAGAACTTGGATCCATTTTTGATGTTGGATCACTTCTCAGTATCCCCCCCTGGAGGATTCCCTGATCATCCCCACAGAGGTTTTGAGACCGTTACCTACGTCCTAGAGGGGGGCATAACTCACCAAGATTTTGCAGGGCACCAGGGCACAATCAGAGCTGGCGATGTTCAGTGGATGACCGCAGGCAGGGGAATCATTCACTCTGAGATGCCTGCCCAACCAACCAACAACAACGGCTTGCAGCTATGGATCAACTTATCCGCCAACAACAAGATGATTGAACCCAACTACCAAGAACTTCTGAGCGAGAACATACCATCGGCAGAGCAGGAAGGGGTGGAGGTGAGAGTGATAGCAGGAGAAGCAATGGGGGTGCATTCCCCGGTCTATACTCGAACTCCAACCATGTTCCTTGACTTCACGCTACGTCCCGGAGCTGAGTTGCATCAGAGCATTCCGGAGACATGGAACTCCTTTGTATACGTCATTGAAGGTGAAGGAGTGTTCGGCTCTCCAACTTCATCGCCAACTGGCCCATACCATGTGCTGGTTCTGAGCCAAGGGGATGGCCTCAGCGTCTGGAACAACAACAACAACTCCTCTTCAAAGCCTCTCAGGTTTGTGCTCATTGGAGGCCAGCCACTGAACGAGCCCGTGGCTCAGTATGGCCCTTTTGTCATGAACACACAGTCTGAGATCGAAAAGACCATTGAGGACTATCAGTATTGCAGGAATGGCTTTGAGATGAGGAGGTATTGGACCTCTCTCTAG 969 0.5129 MRGLIARHLHLLPFNRRITTNITTITMSASSSALSTPRLVLKKVLAKSQREGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYVLEGGITHQDFAGHQGTIRAGDVQWMTAGRGIIHSEMPAQPTNNNGLQLWINLSANNKMIEPNYQELLSENIPSAEQEGVEVRVIAGEAMGVHSPVYTRTPTMFLDFTLRPGAELHQSIPETWNSFVYVIEGEGVFGSPTSSPTGPYHVLVLSQGDGLSVWNNNNNSSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQYCRNGFEMRRYWTSL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g3088 322 CDD cupin_pirin_C 200 280 - -
Ahy4g3088 322 Pfam Pirin 58 150 IPR003829 -
Ahy4g3088 322 CDD cupin_pirin_N 55 152 - -
Ahy4g3088 322 Gene3D Jelly Rolls 172 281 IPR014710 -
Ahy4g3088 322 PANTHER PIRIN-RELATED 31 321 IPR012093 -
Ahy4g3088 322 Pfam Pirin C-terminal cupin domain 203 312 IPR008778 -
Ahy4g3088 322 PANTHER PIRIN-LIKE PROTEIN 31 321 - -
Ahy4g3088 322 PIRSF Pirin 36 320 IPR012093 -
Ahy4g3088 322 Gene3D Jelly Rolls 51 307 IPR014710 -
Ahy4g3088 322 SUPERFAMILY RmlC-like cupins 38 319 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g3088 Ahy-Chr4 128659128 128660990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g3088 35 317 Calmodulin-binding Proteins AT3G59220 62.676 2.78e-132 376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3454 14 143094658 143096520 Ahy4g3088 4 128659128 128660990 hybridization