Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g3082 ATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATATGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGTACTACTCTTCACTACTTTACCACTATGAACAAATTTACTACTTTAGAGCCGCAACTGGATGGAACCCTACTTTAACTGCTTCTTCTACTGCTGATGTTGTGCAAAGAGCACAATTTTCACAGCCTTGTCTTGGCTTCCAACATTCAAGGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATCCACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGCCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAATGGATGAGAACGAGGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATATTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACACTGCCTCCTCAACCTACATTTTTTAGTTTAGACAAACCATCCATGGAAGGAGATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG 1269 0.4106 MASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADMGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRAATGWNPTLTASSTADVVQRAQFSQPCLGFQHSRVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHPHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEMDENEEGSLQSQTPEEESTSGGSENENDINMDASLPLPPVTTTTLPPQPTFFSLDKPSMEGDYNLGHQNIHDSKNMLTML* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g3082 422 MobiDBLite consensus disorder prediction 344 396 - -
Ahy4g3082 422 CDD HMGB-UBF_HMG-box 255 319 - -
Ahy4g3082 422 SUPERFAMILY HMG-box 242 334 IPR036910 -
Ahy4g3082 422 SMART hmgende2 254 323 IPR009071 -
Ahy4g3082 422 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 374 - -
Ahy4g3082 422 MobiDBLite consensus disorder prediction 237 262 - -
Ahy4g3082 422 Gene3D - 14 132 IPR036431 GO:0003677
Ahy4g3082 422 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Ahy4g3082 422 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Ahy4g3082 422 SMART ARID_2 32 122 - -
Ahy4g3082 422 Coils Coil 304 331 - -
Ahy4g3082 422 Gene3D High mobility group box domain 239 341 IPR036910 -
Ahy4g3082 422 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 374 - -
Ahy4g3082 422 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Ahy4g3082 422 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Ahy4g3082 422 MobiDBLite consensus disorder prediction 344 372 - -
Ahy4g3082 422 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Ahy4g3082 422 SUPERFAMILY ARID-like 31 128 IPR036431 GO:0003677
Ahy4g3082 422 SMART bright_3 36 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g3082 Ahy-Chr4 128607338 128610152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g3082 1 344 ARID Transcription Factor Family AT1G04880 56.233 1.50e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy4g3082 ARID 3.70E-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g3082 - - gmx:100783284 419.468