Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g3050 ATGAGTTTAAGTGTGATAGAGTTACTTCATGGTGTGGTGAGGTTCACACTGGATAACTCCCCAGTTGACATGGCTATCCCGATAAATATAAGTGCAACAGAGCTTTCCACACAAAGTTCCAAACTTGTTTTCCCCAAAAAGAAGCAAAGCACACAAAAACTAACCTCTCTCTCTCTCAGCCCTGCGGTGGTTACCGGTGCTCCGAGAAGCTCACCGGAAATATACTGCAACATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCCCAAGACACGGTTGCTGATGTGAAGAGAAATATAGAGAGAGAACAAGGTGCTGAAGTTTATCCAGCTGCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATTATGCTATCCAAGAGCAAGGTATCATCAGGTGAAGCCTCAACTGCATCATCTGCATCCGCAAAACAGGCAGCTGAACCGGCGAGTTCTTTGCCTCCCACTTCATTGCCATCCTCAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTGCCAGTGATGTGGCCGGCATTTATGGCCAAGCAGCATCAAACCTCATTTCAGGAAGCAATTTAGAATCGACTATTCAACAGATTCTAGACATGGGGGGAGGTAGTTGGGATCGAGATACTGTTATCCGTGCTCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTGTTGAGTATCTCTATTCGGGCATTCCTGAACAAGCTGAAGTACCAGCAGTTGCCAGAACCCCCGCTATTGGGCAGGCAGCAAACCCTTCAGGTGAGGCTCAGGGTCAAGCTCAGGTTGCACCTTCTGGTGGGCCCAACACCAACCCACTCAACCTCTTTCCCCAGGGTATTCCTGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTCCTGCGGAACAGTCAACAGTTCCAAGCCCTGAGAGCGATGGTGCAAGCAAATCCCCAGATTTTGCAGCCCATGCTTCAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTCATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGAGTTGGCTTCTGCAGTGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGACCTGGCAGCCAACTATCTTTTGGATCACCAGAATGAATTTGAAGACTAA 1377 0.4641 MSLSVIELLHGVVRFTLDNSPVDMAIPINISATELSTQSSKLVFPKKKQSTQKLTSLSLSPAVVTGAPRSSPEIYCNMKINVKTLKGTHFEIQVQPQDTVADVKRNIEREQGAEVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTASSASAKQAAEPASSLPPTSLPSSTSQPPASTVGQGVSNSEQNPVTTPASDVAGIYGQAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEVPAVARTPAIGQAANPSGEAQGQAQVAPSGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSELASAVPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFED* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g3050 458 SUPERFAMILY UBA-like 396 455 IPR009060 GO:0005515
Ahy4g3050 458 MobiDBLite consensus disorder prediction 166 213 - -
Ahy4g3050 458 TIGRFAM rad23: UV excision repair protein Rad23 78 457 IPR004806 GO:0006289
Ahy4g3050 458 SMART uba_6 232 272 IPR015940 -
Ahy4g3050 458 SMART uba_6 414 451 IPR015940 -
Ahy4g3050 458 Gene3D - 326 391 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy4g3050 458 SMART CBM 333 376 IPR006636 -
Ahy4g3050 458 Pfam Ubiquitin family 80 153 IPR000626 GO:0005515
Ahy4g3050 458 Gene3D - 225 275 - -
Ahy4g3050 458 SUPERFAMILY Ubiquitin-like 78 158 IPR029071 -
Ahy4g3050 458 SUPERFAMILY XPC-binding domain 332 394 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy4g3050 458 Gene3D - 406 454 - -
Ahy4g3050 458 MobiDBLite consensus disorder prediction 166 212 - -
Ahy4g3050 458 Gene3D - 74 157 - -
Ahy4g3050 458 SMART ubq_7 78 152 IPR000626 GO:0005515
Ahy4g3050 458 MobiDBLite consensus disorder prediction 291 314 - -
Ahy4g3050 458 SUPERFAMILY UBA-like 228 283 IPR009060 GO:0005515
Ahy4g3050 458 MobiDBLite consensus disorder prediction 293 314 - -
Ahy4g3050 458 CDD Ubl_Rad23 78 151 - -
Ahy4g3050 458 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 230 273 IPR015940 -
Ahy4g3050 458 PRINTS DNA repair protein Rad23 signature 425 439 IPR004806 GO:0006289
Ahy4g3050 458 PRINTS DNA repair protein Rad23 signature 408 424 IPR004806 GO:0006289
Ahy4g3050 458 PRINTS DNA repair protein Rad23 signature 361 383 IPR004806 GO:0006289
Ahy4g3050 458 PRINTS DNA repair protein Rad23 signature 440 455 IPR004806 GO:0006289
Ahy4g3050 458 CDD UBA1_Rad23_plant 226 275 - -
Ahy4g3050 458 Pfam XPC-binding domain 335 390 IPR015360 GO:0003684|GO:0006289|GO:0043161
Ahy4g3050 458 Pfam UBA/TS-N domain 232 270 IPR015940 -
Ahy4g3050 458 Pfam UBA/TS-N domain 413 449 IPR015940 -
Ahy4g3050 458 ProSiteProfiles Ubiquitin domain profile. 78 153 IPR000626 GO:0005515
Ahy4g3050 458 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 78 457 - -
Ahy4g3050 458 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 412 452 IPR015940 -
Ahy4g3050 458 PANTHER UV EXCISION REPAIR PROTEIN RAD23 78 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g3050 Ahy-Chr4 128325111 128328849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g3050 78 151 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 2.75e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g3050 K10839 - cit:102614644 506.908