Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2993 ATGGATCCACAACTCACACCCCAAACCCTAAACTCCACCAGTTTATTCCTTGCCGCCACAACAGCCACCACTCATTCCGAACAACCACCACATTCACTCTCCCTCACCACCGTTCCTTCCACCGTACCACGCTCCAAGCTCATCCCGAACACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGACACAGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACCGGTCTCTCCCATTCTTGGTCCCGCGGCATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCAAACGCTTCCTTGTACCCCTTCCCCTTTGCCAGCCCGTTGAAATCGACGGCGCGGAGGTCACGCTGGTCGACGCGAACCACTGCCCTGGCGCGGTCCAGTTCCTATTCAAGGTCCCAACAAAAGAAGAAGGGAAGAAATTCGAGAGGTATGTTCACACTGGCGATTTCAGGTTTTGTAATTCAATGATTTTGGAGCCTGCAATTCTTGATTTCGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTGTTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGTGTAGTCGAGAGGGTTATTAGTGATTGTGGTGGTGATGGTAGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGGTTGAACTTGCACGGAGAGTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTGCTTGGGTATGGAGAGAGTGGTGTGTTTACCGAGGACAGTTCAGAGAGTAATATTCATGTTGTTGGCTGGAATGTATTGGGGGAGACATGGCCGTATTTTAAGCCAAATTTCGTTAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCCAAGGTTGTGGGATTTGTGCCAACCGGATGGACTTATGAAGTAAAGGGCAATACGTTCGCAGTGAGGTCCAAGGATTCATTTGAGATTCATCTCGTGCCGTATAGCGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAGGGGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAAAGCGACAGTAAGCATGCTGAAAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGACGGCCAACAAGCATGAATTTCTAAAGGGATTTCACCGTGCCACAGGCGACACAGATTTCTTGGTTGAGAAGGATGTTAATGATGGTCAGAAGCCAGGAAAAAACATGGAGGAAGGAATCAAGCCATCTGAGTTGGATGGTGAGGAAAGTACAACTCCGTATGTTGCTGCTAGTGTGCCCTCTTCTACTGGGGAACCGTGTACAGAAAGTGTTACTTTACTAACTGATGAAGAAAAAGAGAAAATGATTGAAGAACTTGGTAATTGTTTGCCGGCATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGCTTCTAATTTTTATGAACGTGAAACTGAATTTCACAAGCAAGCATTTTCTTGTCAAACTTCTTCGGTGTCCAAGTGCAGCTCACTAAATGACATAGATTCTCCTTCAAAAGCTTGCCTGAATTCGAGCAGCACTACCAAAAATAACGATGTTTTTCCAAGCCAGGACTCTACTAAACTAACTATCTTGAAGCATACAGTTTTAAGTCAAGCTTCCTCTGCCAAAAGGAATAAAATTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAGTCACAGTCACAATCAAGTGATCCAAAGCAGTCCACCATAACAAAATTCTTCAGCAAAGTATTGCCTGTGAAGCCTAGTGTTGCTCAGTCTGATCGTTCTGAATTGATGATTGGCGTAAGCCCTAAAGTTGAAAATATGTTGCCAGATGATGTTGGAAATCGGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAAAGAGTCATTAAAAGATCATGCCATAACTATAATTGAGAAGGCAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGAAATCTTGGTGAAAAGGAAATTTCAGTTCAAGCAGAGTGTAAAATTGATAGCTCTTTAGAGAAGAATTGTGTGTTACATGAATTGAAAGGCATTCCTGATACCACCGTGAAGAGAATTCATGTAACTCTACCACTTGAGAAATACAATCCTAAAGAGCATGCTTGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTGGAGGATGAGAAAGGAAAGATTAAGGCTACTTCAATGTTATGCAATACATTCCGAAGTTTGCTGGCCCTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCAGCAGACCATGAAAAGATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGCGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCAACACCACTTCTGATTAAGGATGTTTTCTCTGCACTGCAAAAGATAAGTTTACAAACAGGCCATGGAAGCACATCTCGGAAGAAAGACATTATCATTCGTCTCATGTGTTCCTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTTAAAACTGTTTTACCTGCCTTGGCTCAAGCTGTTGTTATGAATTCTTTCCCTACAGTACAACAAGAAGGAACTGCAGAGAATTTGAAGGAGAAGTTTCAGGTCCTTTCTGTGGAAATTGTTGAAGCATATAACATAATTCCGAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAACGATCACCAATGGCATTCCCAAGGCATTGAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGATCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGACATAATTAAGGAATCCTGCAAGCCTGTTGCTTCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGAAAAAATGGATTTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGTAAAGGAAGCAAAGATACTCTAGTTACTACAGAGAGCATAAAGGTGGATATTTGCATATTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGGGTTTTCCTCTTCGCACAAGACGGAAATATCTAAAGGATTTGTTATGTGATGAAAAACCAGGGTATTTTGAATATGCAAAGGAAATAACAATTGAAGCAGACAAGGCTTGCGAAACTTGTAAAGACACATTAACCAAGATAAACGCTTTCTTGGAAGATGCTCTTCGTTCTTCCTGTGAAGGAATTATGGTGAAAACATTGGATGTAGATGCTGGTTATTCTCCGTCAAAGCGTTCTGATAAATGGTTAAAGGTCAAACGAGATTATGTCGATGGTTTAAATGATACTCTTGATTTGGTGCCAATTGGAGCTTGGCATGGAAATGGAAGGAAGGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGAGTGATGTCTGGGTTCTCAGATTCGTTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTATCCAAAAAGCCGCTGTATTATCGAACAGCAGAGAAGCCCGACATGTGGTTTTGTCCGCAACTTGTTTGGGAGATACGAGGTGCAGAGTTCACGGTGTCCCCTGTTCATCATGCAGCCATCGGTTTAATTCATCTGTCTCGGGGCATCTCAATACGGTTTCCGAGATTTATTAGGCGTGTGTCGGATAGGAACCCAGAAGAGTGTAGTACAGCAGCAGATATTGTTAATTTGTTTCATTCTCAGCCAAGGAAGAAGGATGTCACAGCTGAAGATTGA 4188 0.4248 MDPQLTPQTLNSTSLFLAATTATTHSEQPPHSLSLTTVPSTVPRSKLIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSHSWSRGIVFCSATTASLLQRILGVPKRFLVPLPLCQPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKKFERYVHTGDFRFCNSMILEPAILDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVERVISDCGGDGSGVLFLVATYVIGKEKILVELARRVKRKVHVDARKMEVLRVLGYGESGVFTEDSSESNIHVVGWNVLGETWPYFKPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKGNTFAVRSKDSFEIHLVPYSEHSNYEELREYVKFLKPRGVVPTVGLDVEKSDSKHAEKMRKYFAGLVDETANKHEFLKGFHRATGDTDFLVEKDVNDGQKPGKNMEEGIKPSELDGEESTTPYVAASVPSSTGEPCTESVTLLTDEEKEKMIEELGNCLPAWVTRSQMLELISISGSNVVEAASNFYERETEFHKQAFSCQTSSVSKCSSLNDIDSPSKACLNSSSTTKNNDVFPSQDSTKLTILKHTVLSQASSAKRNKISGSKPNKKVKVKAKSQSQSSDPKQSTITKFFSKVLPVKPSVAQSDRSELMIGVSPKVENMLPDDVGNRYKDEIDQFMQIINGKESLKDHAITIIEKAKGDVNKALDIYYCNSGNLGEKEISVQAECKIDSSLEKNCVLHELKGIPDTTVKRIHVTLPLEKYNPKEHACWKDGQPAPYLHLARTFSLLEDEKGKIKATSMLCNTFRSLLALSPADVLPAVYLCTNKIAADHEKMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISLQTGHGSTSRKKDIIIRLMCSCREKEIKFLVRTLVRNLRIGAMLKTVLPALAQAVVMNSFPTVQQEGTAENLKEKFQVLSVEIVEAYNIIPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLATITNGIPKALNLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKESCKPVASTFIIDAEVVGIDRKNGFRIMSFQELSSRGKGSKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRTRRKYLKDLLCDEKPGYFEYAKEITIEADKACETCKDTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVDGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPLYYRTAEKPDMWFCPQLVWEIRGAEFTVSPVHHAAIGLIHLSRGISIRFPRFIRRVSDRNPEECSTAADIVNLFHSQPRKKDVTAED* 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2993 1395 Gene3D - 197 351 - -
Ahy4g2993 1395 PANTHER DNA LIGASE 7 713 - -
Ahy4g2993 1395 CDD Adenylation_DNA_ligase_I_Euk 1003 1235 - -
Ahy4g2993 1395 Gene3D DNA ligase/mRNA capping enzyme 1041 1172 - -
Ahy4g2993 1395 Pfam DNA repair metallo-beta-lactamase 271 374 IPR011084 -
Ahy4g2993 1395 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 374 IPR036866 -
Ahy4g2993 1395 CDD OBF_DNA_ligase_I 1241 1384 - -
Ahy4g2993 1395 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 7 713 - -
Ahy4g2993 1395 MobiDBLite consensus disorder prediction 425 466 - -
Ahy4g2993 1395 Gene3D - 1237 1394 IPR012340 -
Ahy4g2993 1395 Gene3D - 48 373 IPR036866 -
Ahy4g2993 1395 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 824 1382 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ahy4g2993 1395 ProSiteProfiles ATP-dependent DNA ligase family profile. 1123 1270 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy4g2993 1395 SUPERFAMILY Nucleic acid-binding proteins 1241 1385 IPR012340 -
Ahy4g2993 1395 MobiDBLite consensus disorder prediction 583 614 - -
Ahy4g2993 1395 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Ahy4g2993 1395 Gene3D - 745 1014 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy4g2993 1395 MobiDBLite consensus disorder prediction 425 443 - -
Ahy4g2993 1395 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 968 1234 - -
Ahy4g2993 1395 Pfam ATP dependent DNA ligase domain 1012 1232 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy4g2993 1395 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 747 995 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy4g2993 1395 Pfam ATP dependent DNA ligase C terminal region 1258 1366 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ahy4g2993 1395 Gene3D - 1023 1236 - -
Ahy4g2993 1395 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy4g2993 1395 MobiDBLite consensus disorder prediction 452 466 - -
Ahy4g2993 1395 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1036 1044 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2993 Ahy-Chr4 127795606 127803823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2993 751 1385 Core DNA Replication Machinery Family AT1G08130 38.462 2.94e-161 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2993 - - aip:107635689 2672.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3358 14 142231136 142239353 Ahy4g2993 4 127795606 127803823 hybridization