Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2949 ATGGCCGCTGGTATGGATATGTCCCTTGACGAAGTCATCAAGAAGTCCGCGGCTGAGTCCGCCGCTCGCCGCCGCCCAAGGTATCCTCTCTCAGGCCTTGGTCCCGACCGCCGCATCCCTAATCGTGTCTCCGCCACAATGACGCCCTACCCCGTCCCGCAGAATGATTTGCAGGTTGGAAGGCAAATGTTGCAAGGGAGTGTTGTTCCTGGTGTTGGACTGGTTATGGGTCACGGAGCTGGAGTTGGAGCTGAACCTGACACTGAAACCAAACTCTATATTTCTAACTTGGATTATGGTGTTTCCAACGAAGATATTAAGCTGCTGTTTGCAGAAGAGGGCGAGTTAAAGAGATACTCCATACATTATGACAAGAGTGGAAGATCAAAGGGGACAGCAGAAGTTGTCTTTGTGAGGAAGTCTGATGCTCTAGCAGCCATGAAGAAATACAACAACATGAAGCTTGATGGGAAACCATTGCAAATTGAGCTTGTTGGAACTACCGTCGTACCAGCTCCTGATGTTAGACCTGTTGTTCAAAATAGCATATTGGGAAAACCAAGTAACTTCTTTGTATGTGGACAAGGAACGGTCGACGATAGAAGTTTCCAGAATGGCATTTTAGGGGACTACCATCGAACAATCCAGAATGGCATTTTAGGCGACTACCATCGAAGGGGCCTTAGTGACAGGATTGGAGGGAAGATCCCTATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGTGGTCCAAGAAGCAGAGGCCGCAGAGAAACAAGGGACCAAAATAATGGAAAGCTATCTCGTAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAAATCCAAACTGA 912 0.4748 MAAGMDMSLDEVIKKSAAESAARRRPRYPLSGLGPDRRIPNRVSATMTPYPVPQNDLQVGRQMLQGSVVPGVGLVMGHGAGVGAEPDTETKLYISNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFVRKSDALAAMKKYNNMKLDGKPLQIELVGTTVVPAPDVRPVVQNSILGKPSNFFVCGQGTVDDRSFQNGILGDYHRTIQNGILGDYHRRGLSDRIGGKIPIGRRVSSRDLDDDLERYNQRPRGGPRSRGRRETRDQNNGKLSRKDLDDDLERYRMEAMQLKKKNPN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2949 303 Gene3D - 83 166 IPR012677 -
Ahy4g2949 303 Coils Coil 280 300 - -
Ahy4g2949 303 MobiDBLite consensus disorder prediction 243 287 - -
Ahy4g2949 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Ahy4g2949 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Ahy4g2949 303 SMART rrm1_1 91 163 IPR000504 GO:0003723
Ahy4g2949 303 MobiDBLite consensus disorder prediction 18 41 - -
Ahy4g2949 303 CDD RRM_THOC4 90 164 - -
Ahy4g2949 303 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 255 - -
Ahy4g2949 303 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 255 - -
Ahy4g2949 303 SUPERFAMILY RNA-binding domain, RBD 54 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2949 Ahy-Chr4 127415050 127417631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2949 92 165 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.44e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2949 K12881 - gmx:100785926 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3316 14 141850580 141853161 Ahy4g2949 4 127415050 127417631 hybridization