Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2938 ATGATGAAGAGAGAAAGAGAAGTGATTGAAAGCATGACCATGGCAAATTGCTTGATGCTACTATCTAGAGGAAGTGATCAATTTAGGGCAACATATTCTTCAAGTTTTTCTTCTAATTATAACAACAACGACGACAACAACAGCAACAGAGTGTTCGAGTGCAAAACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGAGGGCATAGAGCTAGTCACAAGAAGCCAAGGTTGAATGATGATCATGGTGGCAATAACAAAATGGAAGATCAACATCAATTGGAACCTCAAAAGCCTAAGACTCATGAATGTTCCATTTGTGGGTTGGAATTTGCAATTGGTCAAGCATTAGGTGGACATATGAGGAGGCATAGAGCTACTTCAAATTTGAATCATCATAATGGAAGATTATTATTGCATAATAATAACAATAATAATAATAATAATTCTTCTACTATGAGTAGTAGTAGTGGTGGTAGCACTAGCCTTGAGTCAAAGAATAATAGTAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATTGGAAATTGTTTGTATTGA 594 0.3535 MMKREREVIESMTMANCLMLLSRGSDQFRATYSSSFSSNYNNNDDNNSNRVFECKTCNRQFPSFQALGGHRASHKKPRLNDDHGGNNKMEDQHQLEPQKPKTHECSICGLEFAIGQALGGHMRRHRATSNLNHHNGRLLLHNNNNNNNNNSSTMSSSSGGSTSLESKNNSKRVLVLDLNLTPFENDLEILKIGNCLY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2938 197 Pfam C2H2-type zinc finger 51 77 - -
Ahy4g2938 197 Pfam C2H2-type zinc finger 103 127 - -
Ahy4g2938 197 MobiDBLite consensus disorder prediction 135 168 - -
Ahy4g2938 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Ahy4g2938 197 SUPERFAMILY beta-beta-alpha zinc fingers 50 125 IPR036236 -
Ahy4g2938 197 MobiDBLite consensus disorder prediction 67 100 - -
Ahy4g2938 197 Gene3D Classic Zinc Finger 27 127 - -
Ahy4g2938 197 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Ahy4g2938 197 MobiDBLite consensus disorder prediction 74 100 - -
Ahy4g2938 197 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Ahy4g2938 197 SMART c2h2final6 52 74 IPR013087 -
Ahy4g2938 197 SMART c2h2final6 103 125 IPR013087 -
Ahy4g2938 197 PANTHER ZINC FINGER PROTEIN ZAT5 12 188 - -
Ahy4g2938 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Ahy4g2938 197 PANTHER ZINC FINGER PROTEIN ZAT12 12 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2938 Ahy-Chr4 127294916 127295868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2938 2 197 C2H2 Transcription Factor Family AT2G28710 40.201 7.23e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy4g2938 zf-C2H2_6 1.00E-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2938 - - adu:107486331 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3305 14 141730446 141731398 Ahy4g2938 4 127294916 127295868 hybridization