Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2695 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCGAAGAGGAGAACGGGGCTTCTCAAGAAAGCACACGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCTTCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAGAGACAGGCTCATGCTGAATTTGCTAGCACAAACGATGAGCCACAGGGAAACTGGTCTTATGAATGCATCAAGCTCACCGCCAAAATTGAAGTATTAGAGAAGAACATTAGGAATTTTGTGGGAAATGATCTTGACCCTTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGCAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGAACCAAGTCATGAATCAATCCATCTCGGAGCTGAACAAAAGGGCAAGGCAATTGCAGGAGCAAAACAGTTTGTTAGCAAAGAAGATGAAAGATAAAGAGAAGACAATGAGTGAAGGTCCACAAGTCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTGTCTTCTCAAGATCACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGACAATACTGGAAGAAGCAGGTGAAGCTCAAGATGGTGCTGGTGGCAGCACTGTAATCCCACCATGGATGCTTCAACATTTGACAAGCTAA 738 0.4322 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFASTNDEPQGNWSYECIKLTAKIEVLEKNIRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRARQLQEQNSLLAKKMKDKEKTMSEGPQVCLETLGKSTPNINLSSQDHLPPQRLVPCLNLSGTILEEAGEAQDGAGGSTVIPPWMLQHLTS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2695 245 Coils Coil 123 176 - -
Ahy4g2695 245 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Ahy4g2695 245 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy4g2695 245 PANTHER MADS BOX PROTEIN 1 222 - -
Ahy4g2695 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy4g2695 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 222 - -
Ahy4g2695 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy4g2695 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Ahy4g2695 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2695 Ahy-Chr4 124965823 124978163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2695 1 221 MADS-box Gene Family AT1G26310 51.739 1.01e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy4g2695 K-box 3.20E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2695 K09264 - gmx:100788956 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3055 14 139331702 139344462 Ahy4g2695 4 124965823 124978163 hybridization
Ahy20g2723 20 137287774 137298588 Ahy4g2695 4 124965823 124978163 PCT
Ahy4g2695 4 124965823 124978163 Ahy10g2204 10 110824806 110846673 PCT