Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2694 ATGGGGAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGCAGCAGCTCTAGCATGCTCAAAACACTTGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGCCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGTTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATGCTGCTCCACATAATGCTCACTCATCTCAAGGCTTCTTCCGGCCTCTGGAATGCAACCCCACTTTGCAGATTGGCAGTGACTATAGGTACAATGGAGTAGGGTCAGATCAAATAACTGCTACAACAACAACTCAAGCTCAACAAGTGAGTGGTTTCATTCCTGGATGGATGCTTTGA 762 0.4226 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYAAPHNAHSSQGFFRPLECNPTLQIGSDYRYNGVGSDQITATTTTQAQQVSGFIPGWML* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2694 253 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ahy4g2694 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ahy4g2694 253 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy4g2694 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 239 - -
Ahy4g2694 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy4g2694 253 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy4g2694 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Ahy4g2694 253 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy4g2694 253 Coils Coil 84 107 - -
Ahy4g2694 253 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2694 Ahy-Chr4 124950783 124956204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2694 1 253 MADS-box Gene Family AT5G15800 70.992 5.44e-124 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy4g2694 K-box 2.00E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2694 K09264 - gmx:100786066 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3054 14 139311563 139316915 Ahy4g2694 4 124950783 124956204 hybridization
Ahy20g2721 20 137224860 137232192 Ahy4g2694 4 124950783 124956204 PCT
Ahy10g2203 10 110788249 110795529 Ahy4g2694 4 124950783 124956204 PCT
Ahy4g2694 4 124950783 124956204 Ahy20g2721 20 137224860 137232192 PCT
Ahy4g2694 4 124950783 124956204 Ahy10g2203 10 110788249 110795529 PCT