Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2693 ATGGGTTCAGAGAGAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAGGACAAGTTGCTCACTGAATATGTCACCTTGCATGGGGAGGGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAATTATTTGAGGCCTGGTCTCAAGAAGGGTCAATTAACACCAATGGAAGAAGGAATAATATTTGAATTGCATGCTATTTTGGGAAACAAGTGGTCTACAATAGCAAGGTACTTGCCAGGTAGAACTGATAATGAGATCAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCATAACAAGAAGCTAAAAAAGAGGAGATCAAAGGTGACAAAAGAGCAAGTAGTAATGGAGGACACTAACAAAAGTAATAATAATAATGAAAATACCAAATCCTATGATGATGAGACAAAAGAAAACTACTACAATGATCAACACAATAATATGGGGTTTATTTACCCTAATAATAATAATCCAACAATGTTATTAGAGCAGCAACAAAGCTTCCCTTTGATGCACCAAGATTATTTGTCATCACCTTCATGGCCAGACACTACAACAGCAGATTATGATGCCTTGTGGTTTAGTTTATGGGACTTTGATGTACCACAGGGCTTTGAAGAACATGTTAACAACCTCACCAAATATGTGCTCCCAAACCAAGCTACCTTTTGGTGA 726 0.3926 MGSERGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPMEEGIIFELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNKKLKKRRSKVTKEQVVMEDTNKSNNNNENTKSYDDETKENYYNDQHNNMGFIYPNNNNPTMLLEQQQSFPLMHQDYLSSPSWPDTTTADYDALWFSLWDFDVPQGFEEHVNNLTKYVLPNQATFW* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2693 241 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Ahy4g2693 241 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Ahy4g2693 241 MobiDBLite consensus disorder prediction 110 125 - -
Ahy4g2693 241 SMART sant 61 109 IPR001005 -
Ahy4g2693 241 SMART sant 8 58 IPR001005 -
Ahy4g2693 241 Gene3D - 64 163 - -
Ahy4g2693 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ahy4g2693 241 CDD SANT 11 56 IPR001005 -
Ahy4g2693 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 225 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ahy4g2693 241 PANTHER MYB TRANSCRIPTION FACTOR 4 225 - -
Ahy4g2693 241 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Ahy4g2693 241 MobiDBLite consensus disorder prediction 110 156 - -
Ahy4g2693 241 CDD SANT 66 107 IPR001005 -
Ahy4g2693 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Ahy4g2693 241 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Ahy4g2693 241 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Ahy4g2693 241 Gene3D - 8 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2693 Ahy-Chr4 124936499 124938174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2693 6 217 MYB Transcription Factor Family AT3G30210 52.830 4.04e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy4g2693 Myb_DNA-binding 3.50E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2693 K09422 - gmx:100785540 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3053 14 139296071 139297867 Ahy4g2693 4 124936499 124938174 hybridization