Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2682 ATGATGGGCTTCTTCTTCTCTTTGATGTCACACCACAAAGCTGTTCCCACTTGCTTTGTGTTCTTCTTCCTGCTTTCTTGCACCTGCTTCACTTCAACAGAAGCTTACGATGCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAATATCGGCATATTGCAGCACCTGGCTGGTCAATGGGATGGACATGGGCGAAGAAGGAGGTTATATGGAGCATGATGGGAGGACAAACCACTGAACAAGGAGATTGTTCAAAGTTTAAGGGAAACCCTCCACATTGCTGTAAGAAGGATCCGACCGTTGTGGATTTACTTCCCGGCACACCTTACAACCAGCAAATAGCAAATTGCTGCAAAGGTGGAGTACTTAGCTCATGGGCCCAGGATCCGACCAACGCAGTCGCATCGTTTCAAGTCAGTGTTGGTAGAGCTGGAACCACCAATAGAACTGTCAAAGTGCCCAAAAATTTCACCTTGAAAGCACCCGGTCCGGGCTATACCTGCGGGCCAGCAAAAATTGTGCCACCAACAAAGTTCATTCAATCAGACAAACGAAGAGTGACCCAAGCACTCATGACATGGAACGTGACATGCACGTATTCGCAGTTTCTAGCCCAGAAAACTCCCACTTGCTGTGTCTCTCTCTCGTCGTTTTATAATGATACTATTGTGCCTTGCCCAACATGTGCATGTGGCTGCCAGAGCAACTCATCTTGTGTAAATGCAAATACGCCACATTTGGCATCGGTCGTTGCTGGAAAGAATAACTTTTCTCCTTTAGTTCAATGCACTAGCCATATGTGTCCGGTTAGAGTCCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCACGGTTACCAATTTCAATTACAGGATGAATTATTCAGAGTGGAACTTAGTTGTTCAACACCCGAACTTTGATAATCTGACTCAACTTTTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTGACATAAATGATACTGCTATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAATGAAGCTGGGCCTAATGGTAATGTACAATCAGAGTTGCTCTTCAGAAAGGATAAGTCAACTTTCACTTTCGAGAAAGGTTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAACTGCGTGATGCCACCACCGGATGCTTATCCATGGTTGCCTAATGCTGGTTCTCAAAAGGAAGTTTCCTTGCTTGTTTTAGTGTTGGCTTATTTGGTATCCTTGGTCTTTTACGCATGTGCTTGA 1347 0.4432 MMGFFFSLMSHHKAVPTCFVFFFLLSCTCFTSTEAYDALDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWSMGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVPPTKFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSCVNANTPHLASVVAGKNNFSPLVQCTSHMCPVRVHWHVKLNYKEYWRVKVTVTNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGDINDTAMLWGVKFYNDFLNEAGPNGNVQSELLFRKDKSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQKEVSLLVLVLAYLVSLVFYACA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2682 448 PIRSF COBRA 7 448 IPR006918 GO:0010215|GO:0031225
Ahy4g2682 448 PANTHER COBRA-LIKE PROTEIN 13 447 - -
Ahy4g2682 448 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Ahy4g2682 448 PANTHER PROTEIN COBRA 13 447 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2682 Ahy-Chr4 124825539 124828598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2682 21 446 COBRA Gene Family AT3G02210 74.769 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2682 - - gmx:100783820 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3042 14 139184169 139187243 Ahy4g2682 4 124825539 124828598 hybridization
Ahy20g2707 20 137017631 137020918 Ahy4g2682 4 124825539 124828598 PCT
Ahy10g2192 10 110553231 110556504 Ahy4g2682 4 124825539 124828598 PCT