LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy4g2658	ATGATGATATTGAAATCTTTGGGGTTTTGTGGTTGGAAGACAAATGAAAGTTCATCATCAAAGAGGGAGTATAAAACAGTAATAGAAGAGCTATGCCATCAATTTTGCATGGAAGATATTAGAAAAGCAACCAACAACTTGGACAAGAAACTTCTCCTTGTAGAAGCCACCAATAATTTTTGGTTGTACAAAGGTTGTGTCGAGTATAACGGTACAAGTGATTATACAATTGCAATAAAACGCGGGAACCCTACTAAAAAGAAAAATGAGGAGGATAGCACCCGTTCCTATATGGTGAAGGAAATTGAGGTGCTATGTCAGCTTCGTCACCCAAATATAATCTCACTTATAGGCTTCTGCGACAATGAAAATGAAATCATTGCTGTGTACGAATACATGGCCAATGGATCACTTGATGATTACTTGACAAATAGGAATAACCAACCACTTTCATGGAAGAAAAGACTAGAGATCTGCATCGGAGTAGCACGTGCTCTACACTATCTTCACTCAGGAGTCAAGCGCGTTATCATTCATCGTCTTATAAATTCAAGTTATATTCTTGGAGTTTTGGATAACAATATGATGCCCAAACTTGCATATTTTGGACATTCCTTGCAAGGACCACTCTCTACCTCCAAGCCAAAACCAATTATAGATGTTCTTCAGGGTACAATTGGATACGTCTCCCCTGAAATTTTTTCTTGTGGCATCTACACTGATAAATGTGATGTTTACTCTTTTGGTAACGTTCTACTAGATGTGATATTCGGCAGAAAGGACAAGGATTTGTTGGTCAAGAAGGTCAATATGTTTGCAAGCCTACACTTCGGAAAGAGCACGATTGAATTTCGGGAACATCTTCCCCTTAGAGGCTTCTGGCTCTGGGTAAGGGAGCTCTTATGTAACAGGATCCCTATGGAAGAGCTTGTTGATTCAGATCTTAACGGAAAGATTTCACCCGAGTGTTGGGATGCAGTAACGAGTATTGCTCAAAGATGCATAGAATATGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGAGTTGTTGCTTGAGCGTGCTTTCTCATTGCAGCAACAAGCTGATGATATTACAAACACCAATGCTGCTCATTACACCTTATCCTCCACCACCTATATTCATGGGCGACCATCAATTTGTATTGATGCCAATAACACAGAGGACATACTAAGCCATCAATTTTCCCGAGCTGATCTTGCACTAATGACCGGAAATTTCAATGAGACAAAAATAATTGGAAAAGGTAGTTTTGGGGAATTGTACCAAGGTCGTGTCAGACTTAAAGGTCTAACAGATAATTATTACTATCTTATCGCAATCAAGAAGATGCATTGGCCATCAATTTGTTATTCTGAGATGCAATTCAAGTTCAGGGAAGAAATTGAGAAAATCTGTGTGCTTCGCCATCCAAATTTGGTGTCTCTTTTAGGATTCTGCAATGATGATGGTGATGCTGTTGCTGCGGCTGCTGCTGATGATGATGATTATAATGATGATGATGCCAAGATACTTGTGTCCGAGTTCATACAGAATGGAAGTCTACTTTATAACCTGCATGAGAGTCATCGGAATAAGAAAGCTCTGACATGGAAGAAACGACTGCAAATATGCATTGGAGTAACACAAGGACTACACTACCTTCACACAGCATCCATTTTTCACCGTAACATTAAACTTACAAACATCCTTTTGGATCGCGCTATGGTGCCTAAACTCTCTGATTTTGGGTTTCCCTGGTCAAACCCAATACATGCAGGGTGTTATGCTGCTCCTGAATGGTCTGAAGGCCATGACTTCACAGATAAGTGTGATGTTTACTCTTTTGGTATAGTTCTCCTACAAGTGGTATTCACGAGCAAGCTACCGCTTATTGAGGGGGAAAGTGATCCCATTCTCAAGGGTAAGATTGCACCGCAGTGCTGGGAAGTTTTCTTAGACATCACACGACGGTGTTTGAAATTTGGACCAAATGAGCGACCAACCATCAATGAAGTTATGACTCAACTTGAGCATGCTCTGGCACTACAAGAGGAAGCAGATGCCAACACTAGTGATGAATACAACTTATTATCAATGACCTTTGATGATGATGCCTTATTAGGAAGACGCTTATGCTAG	2142	0.4043	MMILKSLGFCGWKTNESSSSKREYKTVIEELCHQFCMEDIRKATNNLDKKLLLVEATNNFWLYKGCVEYNGTSDYTIAIKRGNPTKKKNEEDSTRSYMVKEIEVLCQLRHPNIISLIGFCDNENEIIAVYEYMANGSLDDYLTNRNNQPLSWKKRLEICIGVARALHYLHSGVKRVIIHRLINSSYILGVLDNNMMPKLAYFGHSLQGPLSTSKPKPIIDVLQGTIGYVSPEIFSCGIYTDKCDVYSFGNVLLDVIFGRKDKDLLVKKVNMFASLHFGKSTIEFREHLPLRGFWLWVRELLCNRIPMEELVDSDLNGKISPECWDAVTSIAQRCIEYEADERPTMGEVELLLERAFSLQQQADDITNTNAAHYTLSSTTYIHGRPSICIDANNTEDILSHQFSRADLALMTGNFNETKIIGKGSFGELYQGRVRLKGLTDNYYYLIAIKKMHWPSICYSEMQFKFREEIEKICVLRHPNLVSLLGFCNDDGDAVAAAAADDDDYNDDDAKILVSEFIQNGSLLYNLHESHRNKKALTWKKRLQICIGVTQGLHYLHTASIFHRNIKLTNILLDRAMVPKLSDFGFPWSNPIHAGCYAAPEWSEGHDFTDKCDVYSFGIVLLQVVFTSKLPLIEGESDPILKGKIAPQCWEVFLDITRRCLKFGPNERPTINEVMTQLEHALALQEEADANTSDEYNLLSMTFDDDALLGRRLC*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy4g2658	713	PANTHER	TYROSINE KINASE FAMILY PROTEIN	397	492	-	-
	Ahy4g2658	713	Gene3D	Transferase(Phosphotransferase) domain 1	133	377	-	-
	Ahy4g2658	713	Gene3D	Transferase(Phosphotransferase) domain 1	517	706	-	-
	Ahy4g2658	713	Gene3D	Phosphorylase Kinase; domain 1	9	132	-	-
	Ahy4g2658	713	ProSiteProfiles	Protein kinase domain profile.	414	682	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy4g2658	713	PANTHER	OS07G0166700 PROTEIN	397	492	IPR045272	GO:0004714\|GO:0006468
	Ahy4g2658	713	SUPERFAMILY	Protein kinase-like (PK-like)	401	684	IPR011009	-
	Ahy4g2658	713	ProSiteProfiles	Protein kinase domain profile.	49	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy4g2658	713	ProSitePatterns	Protein kinases ATP-binding region signature.	420	450	IPR017441	GO:0005524
	Ahy4g2658	713	PANTHER	OS07G0166700 PROTEIN	18	374	IPR045272	GO:0004714\|GO:0006468
	Ahy4g2658	713	SUPERFAMILY	Protein kinase-like (PK-like)	62	354	IPR011009	-
	Ahy4g2658	713	Gene3D	Phosphorylase Kinase; domain 1	389	495	-	-
	Ahy4g2658	713	PANTHER	OS07G0166700 PROTEIN	505	699	IPR045272	GO:0004714\|GO:0006468
	Ahy4g2658	713	Pfam	Protein tyrosine and serine/threonine kinase	417	677	IPR001245	GO:0004672\|GO:0006468
	Ahy4g2658	713	Pfam	Protein tyrosine and serine/threonine kinase	64	348	IPR001245	GO:0004672\|GO:0006468
	Ahy4g2658	713	PANTHER	TYROSINE KINASE FAMILY PROTEIN	18	374	-	-
	Ahy4g2658	713	PANTHER	TYROSINE KINASE FAMILY PROTEIN	505	699	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy4g2658	Ahy-Chr4	124654867	124658756	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy4g2658	365	687	Receptor kinase-like Gene Family	AT5G38990	32.320	3.84e-41	159

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ahy4g2658		PK_Tyr_Ser-Thr	1.50E-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy4g2658	-		-	adu:107486599	1105.89