Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2627 ATGGCGTTCCTCAATAGAATGGGAAGCCTACTGAAGCAATCTGCTGTCAGGCACATCAATCAAGAGTTGTCTGGATCAAAACCTTCGATTTTCCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATCGGAGGTATTTCATATAGCACAGATGAGATGAGTCTGCGGGAGGCTTTTGCACGCTATGGAGAAGTAGTTGATGCAAGGGTCATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGATTCATAACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGAGAATACGTGTGAACTATGCTGCAGAAAAATCACATCCAGGATTCGGCGGTGGTGGCGGCTATGGAGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTAATTTCGGTGGTAATGATAATAGTGGTGGAAGTTATGGAGGTGGTGGATATGGTGCCCCAGCAAGCTATGGCAGTGGCAGCACTCAAACTAGTTTCGCAGATAGCGGTGCTAGTAATTTCCAATTCAATGATAACTCTGGCGGAGATCTTCCCTCTGGTGGAGGCAATACGGGTTTGGGATTTGATCATGAGTTTGATGAACAAAAGGACAGAACAGATGGGGAGTTTCAAGACAACAATCTGAGGGAAAACAATGATGAATCCAGTGATATCGCACAGAACCGTGGGTGA 753 0.4754 MAFLNRMGSLLKQSAVRHINQELSGSKPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNYAAEKSHPGFGGGGGYGGGGYGGGGYGGGGGYGGGGYGGGNFGGNDNSGGSYGGGGYGAPASYGSGSTQTSFADSGASNFQFNDNSGGDLPSGGGNTGLGFDHEFDEQKDRTDGEFQDNNLRENNDESSDIAQNRG* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2627 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Ahy4g2627 250 MobiDBLite consensus disorder prediction 177 250 - -
Ahy4g2627 250 MobiDBLite consensus disorder prediction 177 206 - -
Ahy4g2627 250 Gene3D - 18 154 IPR012677 -
Ahy4g2627 250 SUPERFAMILY RNA-binding domain, RBD 30 150 IPR035979 GO:0003676
Ahy4g2627 250 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 217 - -
Ahy4g2627 250 SMART rrm1_1 41 114 IPR000504 GO:0003723
Ahy4g2627 250 MobiDBLite consensus disorder prediction 216 244 - -
Ahy4g2627 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Ahy4g2627 250 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2627 Ahy-Chr4 124223429 124226263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2627 33 126 C2H2 Transcription Factor Family AT2G19380 34.043 2.02e-12 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2977 14 138482694 138485545 Ahy4g2627 4 124223429 124226263 hybridization