Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2604 ATGGCTACGTCTCGTTGTTTGGTTCCTTTGGTCATTTTCATGTATTCCTTAGCCATTTCAGGTGCCATTGATGGTAATTGGTATGATGCTCATGCAACATTCTATGGTGACATGCAAGGTGGAGAAACCATGAATGGTGCATGTGGATATGGGAATTTATTTGAACAAGGGTATGGACTTGCAAACACAGCACTAAGCACTGCTCTATTCAACCGTGGACTAACATGTGGTGCATGTTTTGAGATCCAATGTGTGAATGATCCACAATGGTGTATTAAGGGTGCAGGAACAATCAAAGTAACAGCAACAAATTTTTGTCCTCCAACTAACGAAAAAGGTCGTCCACCATGGTGTAACCCTCCACAAAAGCACTTCGATTTGTCCATGAAAATGTTCACAACAATAGCAAACTACAAAGCAGGGATAATCCCAGTTCGTTATAGGCGCACTCCATGCATTAAACATGGTGGTGTCAAGTTTGAGTTGAAGGGTAACCCTCATTGGTTGCTAGTGTTGGTTTTTAATGTTGCAAATGCTGGTGATGTTACAAATGTTAAAATAGCAGGTTCAACCACACGTGCATGGATTCCTATGACACGTAATTGGGGGCAAAATTGGCAAACTGGTACTCCATTGAATGGACAAGCATTGTCTTTTATGGTTACAACTAGTGATGGCAAAACGTTGACGTTTAATAATGTTGCTCCTCCCAGTTGGCGACTTGGACAAACTTTTGAGGCCGCAACCAACTTTTAG 756 0.4167 MATSRCLVPLVIFMYSLAISGAIDGNWYDAHATFYGDMQGGETMNGACGYGNLFEQGYGLANTALSTALFNRGLTCGACFEIQCVNDPQWCIKGAGTIKVTATNFCPPTNEKGRPPWCNPPQKHFDLSMKMFTTIANYKAGIIPVRYRRTPCIKHGGVKFELKGNPHWLLVLVFNVANAGDVTNVKIAGSTTRAWIPMTRNWGQNWQTGTPLNGQALSFMVTTSDGKTLTFNNVAPPSWRLGQTFEAATNF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2604 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
Ahy4g2604 251 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Ahy4g2604 251 Gene3D - 157 251 IPR036749 -
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ahy4g2604 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Ahy4g2604 251 PANTHER EXPANSIN-A21-RELATED 17 251 - -
Ahy4g2604 251 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Ahy4g2604 251 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Ahy4g2604 251 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Ahy4g2604 251 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Ahy4g2604 251 Pfam Lytic transglycolase 63 147 IPR009009 -
Ahy4g2604 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Ahy4g2604 251 SMART dpbb_1 62 147 IPR007112 -
Ahy4g2604 251 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
Ahy4g2604 251 Gene3D - 15 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2604 Ahy-Chr4 123999072 124000421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2604 20 251 Expansin Gene Family AT5G39270 64.224 6.34e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2604 - - qsu:112027340 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2953 14 138241993 138243647 Ahy4g2604 4 123999072 124000421 hybridization