Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2580 ATGGCAGCCAGCACTACTTTCTCTCTCTGTTTTGCTGCTGCGTCTTCTTCTTCTTCTTGTAATCATAATTCTAATTCTTTAACGCAATTGAATCAGAAACCGAGGCCTTTGGGAATAGCGAATCGTTTCGTTTCGTCTTCGGTGGCTGCGCCTTTGTCTTCTCTGTGCTTCGGTGCTTCTGCTTCTGTATTCAGCTCCAAAGCTAGGATTTTCACGGCGTTAGCAGCGGTCGTCGATGAAGAGACGGCGGTTGCGGAACGGGAGCGTGGTTTGGCGGAAAATGATGGCGGTTCCGACGAGGAAGAGCAGTGGAAGATGCCGAGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGACACCGAACAGCTACGTCAGATGTTCGAGCCTCACGGAACTATTCTATCCGCTGAGGTTTGCCGGAATGCTGATACTGGTGAGAGTAGAGGATGTGCTTATGTGACATTGTCATCTGTTGCCTCAGCAAGAAATGCAGTCACTGCCTTGGATGGATCGGATGTTGGTGGACGGGAGATGCGGGTTAGATTCTCAGTTGAGATGAATCCCCAGAGGAGGAACCTTGAGACTGCGAATGCTTCACCAAAGAGAGTTGTATACTATGAAGCTCCTCATAAGTTGTACGTTGGGAATCTTGCTAGGGCAGTTAGACCTGAAGAGTTGAGACATCTTTTTAGCAAATTTGGCAATGTGGCTAGTGTAAGATTGTTGAAAGATCAGAAACAAGGGCGAACCCGAGTTTATGCATTTCTCTCTTTCCTATCGGAGAAAGAACGTGATGCTGCATTGACCCTGAATGGAACGGAACTTTGTGGTCGTACGTTGGTGGTTAGAGTGGGTATAGACAAGGGTGAAGCTTAA 885 0.4814 MAASTTFSLCFAAASSSSSCNHNSNSLTQLNQKPRPLGIANRFVSSSVAAPLSSLCFGASASVFSSKARIFTALAAVVDEETAVAERERGLAENDGGSDEEEQWKMPRATEVYVCNLPRSCDTEQLRQMFEPHGTILSAEVCRNADTGESRGCAYVTLSSVASARNAVTALDGSDVGGREMRVRFSVEMNPQRRNLETANASPKRVVYYEAPHKLYVGNLARAVRPEELRHLFSKFGNVASVRLLKDQKQGRTRVYAFLSFLSEKERDAALTLNGTELCGRTLVVRVGIDKGEA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2580 294 SMART rrm1_1 214 286 IPR000504 GO:0003723
Ahy4g2580 294 SMART rrm1_1 111 184 IPR000504 GO:0003723
Ahy4g2580 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Ahy4g2580 294 Gene3D - 198 294 IPR012677 -
Ahy4g2580 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Ahy4g2580 294 SUPERFAMILY RNA-binding domain, RBD 212 292 IPR035979 GO:0003676
Ahy4g2580 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Ahy4g2580 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Ahy4g2580 294 SUPERFAMILY RNA-binding domain, RBD 106 195 IPR035979 GO:0003676
Ahy4g2580 294 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 18 292 - -
Ahy4g2580 294 CDD RRM_SF 215 286 - -
Ahy4g2580 294 Gene3D - 75 197 IPR012677 -
Ahy4g2580 294 PANTHER OS02G0815200 PROTEIN 18 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2580 Ahy-Chr4 123700886 123702828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2580 108 293 Eukaryotic Initiation Factors Gene Family AT3G16380 29.412 3.19e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2580 - - adu:107486682 511.916