Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2533 ATGGAGGGGATGTTGAGCCTCAACACTGAAGCAAGTAATGATGCAAATCCCAAGCAACAATCCTCTTCTCTTGCAAATTTTGCAAAGAATTATCCTCCTAGCTTTCCTAGAAAGGTATTGGCAGAGATAATAGGGACATATTTATTGGTGTTTGTGGGAAGTGGTTCAGCTGGACTTAGTGCCATTGATGAAAACAAGGTATCAAAATTGGGAGCTTCACTTGCAGGAGGATTCATTGTAACGGTTATGATCTACTCCATTGGACACATCTCCGGGGCACATATGAATCCAGCTGTTTCCTTAGCTTTTGCCTCCATCAACCGTTTTCCTTGGAAGCAGGTACCATTTTATATTGCAGCCCAACTAACAGGAGCAATATGTGCTTCATACACACTGAGGGTGTTGCTAGAACCAGCAACACAAATTGGTGCCACGTCACCCTCAGGGTCAAACATTCAAGCACTTGTCATGGAAATTGTTGCCACATTCACTATGGTCTTCATATCCGCTGCTGTTGCCACTGACCCTAAAGCTATTGGAGAACTATCAGGGGTAGCAGTAGGTTCTTCAGTTAGCATAGCTAGCATTGTAGCTGGACCAATATCAGGGGGGTCAATGAACCCAGCAAGGTCATTAGGTCCTGCAATTGCCACTGCATCTTATAAGAGTATTTGGGTCTATTTTGTTGGACCAATCATTGGGGCACTCTTAGGGGTATGGTCCTACACTGTGGTTCAAGACATAGATAATAATAATAAGCCACCTCCTTCTTCTTCCCTTTCATCAATATTGGGCCAGAGAATTATTAGTAGTGAAGCTGAGCATGTTGCTAACAAAGATCACTTCAGTTCTGTGTGA 858 0.4336 MEGMLSLNTEASNDANPKQQSSSLANFAKNYPPSFPRKVLAEIIGTYLLVFVGSGSAGLSAIDENKVSKLGASLAGGFIVTVMIYSIGHISGAHMNPAVSLAFASINRFPWKQVPFYIAAQLTGAICASYTLRVLLEPATQIGATSPSGSNIQALVMEIVATFTMVFISAAVATDPKAIGELSGVAVGSSVSIASIVAGPISGGSMNPARSLGPAIATASYKSIWVYFVGPIIGALLGVWSYTVVQDIDNNNKPPPSSSLSSILGQRIISSEAEHVANKDHFSSV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2533 285 Gene3D Glycerol uptake facilitator protein. 5 255 IPR023271 -
Ahy4g2533 285 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 SUPERFAMILY Aquaporin-like 32 247 IPR023271 -
Ahy4g2533 285 PANTHER AQUAPORIN NIP2-1 14 251 IPR034294 -
Ahy4g2533 285 TIGRFAM MIP: MIP family channel proteins 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 Pfam Major intrinsic protein 34 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy4g2533 285 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 14 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2533 Ahy-Chr4 123184933 123188323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2533 37 250 Major Intrinsic Protein MIP AT5G37820 50.000 1.92e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2533 K09874 - gmx:100795261 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2883 14 137492757 137496674 Ahy4g2533 4 123184933 123188323 hybridization