Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2531 ATGGACATAGCAGCACAAACAACAATCAACAACAACAACAACATCAACAATAGTAGCACTACTCCAACAAAATCATCACCACCAACTGAAGAACATGAAACTGAAACACCAACTAGGATTATTCAAAACACTACTACTACTACAACCATACCCAACACACCAACACCATCAAAGGCTTTAACTTTCTCAAATGGGGTTCTAAAACGCCACCACCCTCACCATATCTCCGCCGCCAACCACCACCACCAACTCGTTGTATACAAGGAATGCTTGAAGAACCACGCCGCCGCTCTCGGCGGCCACGCGCTCGACGGCTGTGGGGAATTCATGCCCGCACCCACCGCCACCGCCGGCGACCCTACATCCATCAAGTGCGCCGCCTGCGGCTGCCACAGGAACTTCCACCGCCGTGAGCCAGAGGACCCGCTTATCTCCTCTGCCTTCGAGTTTCATTCACAAAACCGCCACCATCCTCCTCCACCGCCACCTCCACCGCCTCACCGAAGCCCTAACTCGGCGTCTCCGCCGCCGATCTCCTCCGCTTACTATCACCACCCGTCCGCAGCACCTCACATGCTACTTGCCCTCTCCGGCGCTGGCATCGCGGCGCCGCCGGAGAGCACCGCGGCACCAATTTCCGCCGCCGCAGCTTTAGCGTCTCCGAGGAAGAGGTTCAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCAGAGCGTGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTTCATGAGTTCTGCAGCGAGGTTGGCGTTGATCGTGGTGTTCTCAAAGTTTGGATGCATAACAACAAGAACAATCTCGCGAAGAAAGAGAGTAATGGCGCTGCTGTTACCACCATTAACGGTGGTGTTGGTGTTCTTGGTAGTGGTGGTGGTAGCAGAAGCATTATTATGGAGGAAGATCCTAATAATAACAACAATGGTAATGGTGTTGGTGTTGGTGTTAATGGCGGTGCTAATGGTTCTTCTTCTTCTTCTTAA 1023 0.5279 MDIAAQTTINNNNNINNSSTTPTKSSPPTEEHETETPTRIIQNTTTTTTIPNTPTPSKALTFSNGVLKRHHPHHISAANHHHQLVVYKECLKNHAAALGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRREPEDPLISSAFEFHSQNRHHPPPPPPPPPHRSPNSASPPPISSAYYHHPSAAPHMLLALSGAGIAAPPESTAAPISAAAALASPRKRFRTKFSQEQKEKMHKFAERVGWKMQKRDDDLVHEFCSEVGVDRGVLKVWMHNNKNNLAKKESNGAAVTTINGGVGVLGSGGGSRSIIMEEDPNNNNNGNGVGVGVNGGANGSSSSS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2531 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 293 - -
Ahy4g2531 340 Gene3D - 211 284 - -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 155 173 - -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 151 182 - -
Ahy4g2531 340 SUPERFAMILY Homeodomain-like 216 283 IPR009057 -
Ahy4g2531 340 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 293 - -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 1 51 - -
Ahy4g2531 340 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 87 138 IPR006456 -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 307 340 - -
Ahy4g2531 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 138 IPR006456 -
Ahy4g2531 340 Pfam ZF-HD protein dimerisation region 85 139 IPR006456 -
Ahy4g2531 340 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 279 IPR006455 -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 1 27 - -
Ahy4g2531 340 MobiDBLite consensus disorder prediction 312 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2531 Ahy-Chr4 123137056 123138901 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2531 26 302 ZF-HD Transcription Factor Family AT3G28920 47.333 1.71e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy4g2531 ZF-HD_dimer 2.50E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2531 - - gmx:100786999 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2881 14 137448684 137450604 Ahy4g2531 4 123137056 123138901 hybridization
Ahy20g2541 20 133725029 133726859 Ahy4g2531 4 123137056 123138901 PCT
Ahy10g2054 10 108410688 108412528 Ahy4g2531 4 123137056 123138901 PCT
Ahy4g2531 4 123137056 123138901 Ahy20g2541 20 133725029 133726859 PCT
Ahy4g2531 4 123137056 123138901 Ahy10g2054 10 108410688 108412528 PCT