Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2521 ATGTCTAGCGGAAGCAGATCATCAAGGCAGCGATCTCACTCTTCAAGGATCTCCGACGATCAAATCATCCAGCTTGTTTCCAAGTTGCGCCAACTTGTTCCAGAGATTCGTAACAGGCGCTCCGACAAGGTATCGGCTTCTAAGGTGCTGCAAGAGACTTGCAATTACATAAAAAACTTACACAGAGAGGTTGATGATTTAAGCGAGCGTTTGGGTCAGTTGTTATCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATTAGGAGCCTACTTAGCAACTAA 285 0.4526 MSSGSRSSRQRSHSSRISDDQIIQLVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIKNLHREVDDLSERLGQLLSTIDADSAEAAIIRSLLSN* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2521 94 CDD bHLH_AtPRE_like 19 77 - -
Ahy4g2521 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Ahy4g2521 94 Coils Coil 50 77 - -
Ahy4g2521 94 Pfam Helix-loop-helix DNA-binding domain 22 60 IPR011598 GO:0046983
Ahy4g2521 94 PANTHER TRANSCRIPTION REGULATOR 5 92 - -
Ahy4g2521 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 79 IPR036638 GO:0046983
Ahy4g2521 94 Gene3D - 5 89 IPR036638 GO:0046983
Ahy4g2521 94 PANTHER TRANSCRIPTION FACTOR PRE 5 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2521 Ahy-Chr4 122967712 122969025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2521 14 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 3.54e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy4g2521 HLH 4.60E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2521 - - cmos:111455160 138.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2871 14 137271168 137272556 Ahy4g2521 4 122967712 122969025 hybridization
Ahy20g2532 20 133378631 133381053 Ahy4g2521 4 122967712 122969025 PCT
Ahy10g2046 10 108119841 108122538 Ahy4g2521 4 122967712 122969025 PCT
Ahy4g2521 4 122967712 122969025 Ahy20g2532 20 133378631 133381053 PCT
Ahy4g2521 4 122967712 122969025 Ahy10g2046 10 108119841 108122538 PCT