Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2518 ATGGCATTCCCACCACCACCCTCTTCACAAAGTGCTAATAATTTCATCTTCCACAATCATGAACACCAACCAGATCATCATCATCATCATCATCACCAACCCTTCTCTTCTAACTCCCTCAATTCCTTCCCCTCTTTGCCAATTCCTTCCCATCACCACTTCTTAGGTCAACCACACAACACACCCTCTCTCTTTCTCAAGATGGGTTCACACCAATTCTTAGGGATCGAGAACAAGTGCGGCGGCGACGGCGACGACGACCTATCGGATGACGGATTCGGGTTCCAATTTGGGGAGAAGAAAAAGAGGCTGAACATTGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGTTAGGGAACAAGCTTGAACCTGAAAGAAAGGTTCAACTTGCTAAGGCCCTTAACTTGCAACCGAGACAAATTGCTATTTGGTTTCAGAATCGGAGGGCAAGGTGGAAGACTAAGCAACTTGAAAGGGAATATGAATCTCTTAAGAAGCAGTTTGAAGCATTGAAGGTTGATAATGATGCACTTAAGGTTCAGAATCAGAAATTACATGCTGAGTTACAGGCCCTAATCAAAGGAAAGGAGTATTATTGTGAAGAAGATGGAGCAATAATAAGCAACCTTAATAAGAAAGAAGCTGGAGAGGGTTCATGGAGTAATAATAATAATAATAATAATAATAATGGTTGCAGTGACAATAATAATATTTCATCTTCAGACATTAACTTAGATCTCTCAACAACACCAATTATAAACACTAGTCCAGTATCTTCTCAAAATGCCAAAACTACCCTTGAATCCAATAATGATAATTCTCTAAAACCCAACAACAACATAATTCAGCTCCTCCAATACTCACCATCATCATCATCAAGACCACAAGGAATTCCTCATCAAGATGAAGGCTTATGCAACATGTTTCATCACCAAATTGAAGATCAACAGAATCTGTGGCCCTGGCCTGAACACCAGCCTCATAATAATTTCCACTGA 999 0.4024 MAFPPPPSSQSANNFIFHNHEHQPDHHHHHHHQPFSSNSLNSFPSLPIPSHHHFLGQPHNTPSLFLKMGSHQFLGIENKCGGDGDDDLSDDGFGFQFGEKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWKTKQLEREYESLKKQFEALKVDNDALKVQNQKLHAELQALIKGKEYYCEEDGAIISNLNKKEAGEGSWSNNNNNNNNNGCSDNNNISSSDINLDLSTTPIINTSPVSSQNAKTTLESNNDNSLKPNNNIIQLLQYSPSSSSRPQGIPHQDEGLCNMFHHQIEDQQNLWPWPEHQPHNNFH* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2518 332 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Ahy4g2518 332 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Ahy4g2518 332 CDD homeodomain 100 156 IPR001356 GO:0003677
Ahy4g2518 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 329 IPR045224 GO:0003700
Ahy4g2518 332 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 329 - -
Ahy4g2518 332 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Ahy4g2518 332 MobiDBLite consensus disorder prediction 214 235 - -
Ahy4g2518 332 Pfam Homeobox associated leucine zipper 155 192 IPR003106 GO:0006355|GO:0043565
Ahy4g2518 332 Gene3D - 96 164 - -
Ahy4g2518 332 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Ahy4g2518 332 MobiDBLite consensus disorder prediction 254 277 - -
Ahy4g2518 332 SMART HOX_1 98 159 IPR001356 GO:0003677
Ahy4g2518 332 MobiDBLite consensus disorder prediction 21 42 - -
Ahy4g2518 332 Coils Coil 147 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2518 Ahy-Chr4 122915220 122918463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2518 85 324 Homeobox Transcription Factor Family AT5G15150 51.029 2.20e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy4g2518 Homeodomain 7.50E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2518 K09338 - gmx:100816097 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2867 14 137211213 137214605 Ahy4g2518 4 122915220 122918463 hybridization
Ahy20g2528 20 133184542 133187464 Ahy4g2518 4 122915220 122918463 PCT
Ahy10g2042 10 107977618 107980472 Ahy4g2518 4 122915220 122918463 PCT
Ahy4g2518 4 122915220 122918463 Ahy20g2528 20 133184542 133187464 PCT
Ahy4g2518 4 122915220 122918463 Ahy10g2042 10 107977618 107980472 PCT