Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2468 ATGGCAGAAAGTACAAGGAAACTTGCCCTTATTTTCTTGGTTACTTTTGCCATTGTTATTCCATGCATTAAGGCTGGCATTGCTGAATATGATGATTTTCTCAAGGCACAAGCTGAGATGGCCCATGAAATTGCCCTTGAGTCCTTCGTTCCTAATCCCTTGAACGTTACATCTGAGCTCAATCTCCACGTTCATCTGGCAATGGAGGAAGCAGCAAACATGACAAGGAGGAATCTAAGGCAAGGACATGCATTCGATCCACATGCACCATGCGAGGCCACTAACCCTATTGACCGTTGCTGGAGGTGCCGTGCCGATTGGGCCAAAAACCGCCAATTGTTGGCCAAATGTGGAAAGGGTTTCGGACGTAGGGCCGTCGGAGGCCTCGGTGGCCCCATCTACGTCGTCACCGACGAATCCGATAACGATTTGGTTAACCCTGCTCCCGGAACCCTAAGACATGCCGTTACTCAGAAGGGACCCTTGTGGATCATCTTTGCACGCAGCATGGTTATTAGATTGCAACAAGAGTTGTTGATTTCCTCCGACAAGACCATCGACGGCCGTGGTGCTCATGTTATGATCAGGGACGGCGCTGGCCTCACTATGCAATTCGTCAACAATATCATTGTCCATAACCTCCACATCAAGAAGATCAAGTCCATGGCTGGTGGCATGATTAGGGATTCTTACAACCATGTTGGTCAAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTCGGATCCTCCAACATTTGGGTTGATCACATTTCCATGTCTGAGTGTGATGATGGTCTTGTTGACGTTATCCAGGGCTCTACCGCCATCACCATCTCCAATTGCCACATGACCAAGCATAACGACGTGATGTTGTTCGGAGCTAGTGACTCGTACACCGGCGACAAGATCATGCAAATCACGGTAGCATTCAACCACTTCGGACAAGGATTGATTCAGAGGATGCCAAGGTGCAGATATGGATTCTTCCATGTGTTGAACAATGACTACACTCATTGGTTGATGTATGCCATTGGAGGAAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATTGCACCAAACAACAATGCTGCCAAGGAAATCACACACAGAGACTATGCACCAAAAGAGGTGTGGTCAAAGTGGCAATGGACCTCAGATCACGACCTCTTCATGAATGGTGCCACGTTTCTTCAATCTGGTCAACCAATCACTAAGCTGCAAAATGTCAACAAAGGGATGATAATGAAGCCAAGACCTGGTAGCCATGCCAATAGGCTAACAAAGTATGCTGGTGCCCTTGGTTGTATTGTAGGCAAGCCTTGCTAG 1338 0.4776 MAESTRKLALIFLVTFAIVIPCIKAGIAEYDDFLKAQAEMAHEIALESFVPNPLNVTSELNLHVHLAMEEAANMTRRNLRQGHAFDPHAPCEATNPIDRCWRCRADWAKNRQLLAKCGKGFGRRAVGGLGGPIYVVTDESDNDLVNPAPGTLRHAVTQKGPLWIIFARSMVIRLQQELLISSDKTIDGRGAHVMIRDGAGLTMQFVNNIIVHNLHIKKIKSMAGGMIRDSYNHVGQRTRSDGDAISIFGSSNIWVDHISMSECDDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYTGDKIMQITVAFNHFGQGLIQRMPRCRYGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEITHRDYAPKEVWSKWQWTSDHDLFMNGATFLQSGQPITKLQNVNKGMIMKPRPGSHANRLTKYAGALGCIVGKPC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2468 445 SUPERFAMILY Pectin lyase-like 95 436 IPR011050 -
Ahy4g2468 445 SMART amb_all 169 366 IPR002022 -
Ahy4g2468 445 PANTHER PECTATE LYASE 5 445 - -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Ahy4g2468 445 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Ahy4g2468 445 Pfam Pectate lyase 178 360 IPR002022 -
Ahy4g2468 445 PANTHER PECTATE LYASE 18-RELATED 5 445 IPR045032 GO:0030570
Ahy4g2468 445 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Ahy4g2468 445 Gene3D - 94 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2468 Ahy-Chr4 122113666 122116044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2468 10 445 Polysaccharide Lyase AT1G14420 56.444 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2468 K01728 - gmx:100780236 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2811 14 136504160 136506832 Ahy4g2468 4 122113666 122116044 hybridization