Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2421 ATGGCTTCCATCACCATTATGGATTCATCAGAATCTGCATACTTAGAATACATTCAACAATACCTTCTTGAGAATGATTCAATCATTTTTACTAATGATCTCAAAATGGATGACTCTAAATCATGTCAATCTGGTTCAAACCCTAATTGCGATAGCATTTTTTATACAACTTCTCATAGTGAGAGTAGTCCTACCGGTGCCTCGGCAGAGCGTGAAGTGCACGCGCCTCCAACATGGAAGCGTTATAGGGGTGTGAGGCGTAGGCCATGGGGGAAGTTTGCCGCTGAGATTAGGGATCCCAAAAAGAATGGGGCTAGGGTTTGGCTTGGAACTTATGAGACTGAAGAAAAAGCGGCTATAGCATATGATAAAGCGGCTTTCAAAATGCGCGGTCGAAAGGCCAAGTTGAATTTTCCTCATCTTATTGGCTCGGACGATAAACCTGTCTTATCGTCTGAGCCAATGAGAGCATCCGCTGTAAAACGGATCTCTCCAGAACCTTCTTTGCCATCCTCACCTTCATCGGAGGATGATTCGAACTCGCCGGGGTCAAAGAGGAGAAGGAACCTAGCGGATTTACTAAACAAGATAGCCAAGAATAGAAACCAAGCTAATAAGGTGGTTAAAATGGATCCAGAGGCAAATGTTGCTGATTATTGGTTGAATGATGAATTCAATATGATTCTAGTTTAA 693 0.4286 MASITIMDSSESAYLEYIQQYLLENDSIIFTNDLKMDDSKSCQSGSNPNCDSIFYTTSHSESSPTGASAEREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEKAAIAYDKAAFKMRGRKAKLNFPHLIGSDDKPVLSSEPMRASAVKRISPEPSLPSSPSSEDDSNSPGSKRRRNLADLLNKIAKNRNQANKVVKMDPEANVADYWLNDEFNMILV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2421 230 MobiDBLite consensus disorder prediction 145 186 - -
Ahy4g2421 230 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Ahy4g2421 230 MobiDBLite consensus disorder prediction 165 179 - -
Ahy4g2421 230 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Ahy4g2421 230 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Ahy4g2421 230 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Ahy4g2421 230 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Ahy4g2421 230 PANTHER DNA-BINDING DOMAIN 8 203 IPR044808 GO:0003700|GO:0009873
Ahy4g2421 230 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 8 203 - -
Ahy4g2421 230 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Ahy4g2421 230 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Ahy4g2421 230 CDD AP2 80 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2421 Ahy-Chr4 121486621 121487583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2421 34 176 AP2-EREBP Transcription Factor Family AT2G44840 52.597 3.75e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy4g2421 AP2 2.90E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2421 K09286 - gmx:548037 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2758 14 135828347 135829260 Ahy4g2421 4 121486621 121487583 hybridization