Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2420 ATGGATTCCGATTATGAATTTCTAGAATCTGTTCAACAATACCTTCTTGGACATGATTCCAACAACACGGTTGACCTTTTTGACCATAATACCCTCCAATTTCCCTCTCACAACCCCTTACCAAACCCTAAATCCGATATACTTCAAGAACAAGAAAGAGATACAAATGAAAATGAACATGCGCCTCCAACATGGAAGCGTTATAGAGGCGTGAGGCGGCGGCCGTGGGGGAAGTTCGCCGCGGAGATAAGGGATCCGAAGAAGAACGGAGCTAGGGTTTGGCTTGGAACTTATGAGAAGGAAGAAGAAGCTGCTTTGGCATATGATAGAGCTGCTTTTAAATTGCGTGGTCAAAAAGCTAAGCTCAATTTTCCTAATCTTTTTGGCTCTGATTCTGAAAATGTATCCTTAGAAGTAATGGAGCCAATCATAAAGATCACAACTTGTAAGGAGAATTTCTCAGACTCTTCTTCATCATCATCATCATCACTTGCAGGGTCAAAGAGAAAGAGGAACTTAACTCATTTACTAAATCAACTAGCCAAAAATAAGAGCCAAGCCAAAGTTTATGTAGGAGGAAATTAA 585 0.4068 MDSDYEFLESVQQYLLGHDSNNTVDLFDHNTLQFPSHNPLPNPKSDILQEQERDTNENEHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYEKEEEAALAYDRAAFKLRGQKAKLNFPNLFGSDSENVSLEVMEPIIKITTCKENFSDSSSSSSSSLAGSKRKRNLTHLLNQLAKNKSQAKVYVGGN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2420 194 PANTHER DNA-BINDING DOMAIN 2 186 IPR044808 GO:0003700|GO:0009873
Ahy4g2420 194 MobiDBLite consensus disorder prediction 30 45 - -
Ahy4g2420 194 MobiDBLite consensus disorder prediction 30 62 - -
Ahy4g2420 194 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Ahy4g2420 194 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Ahy4g2420 194 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Ahy4g2420 194 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Ahy4g2420 194 MobiDBLite consensus disorder prediction 47 62 - -
Ahy4g2420 194 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 186 - -
Ahy4g2420 194 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Ahy4g2420 194 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Ahy4g2420 194 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Ahy4g2420 194 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2420 Ahy-Chr4 121473918 121474764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2420 67 130 AP2-EREBP Transcription Factor Family AT2G44840 85.938 5.95e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy4g2420 AP2 5.90E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2420 K09286 - gmx:548037 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2757 14 135823658 135824397 Ahy4g2420 4 121473918 121474764 hybridization