Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2399 ATGCCACCAATTATGTCGGGAAAAATTATTGTCTTAATATTGCTTTGTGTGTTTATAGTAAAAGTGTCTTCATCAAGTGAAGCAAATGCACTCTTAAAATGGAAGGCCAGCCTTGAGAAGCAAAGCCAAGTTATGTTATCATCTTGGAAGAACAGGACAAGTCCATGCAAATGGAAAGGAATTCAATGTGACAAATCAAAATCCATCACAACCATCAATCTTGAAAACTTTGGACTCAAAGGTACACTTCACAGTCTTAGCTTCTCTTCATTTCCCAACCTCATTTCCATAAACATATACAACAACTTGTTCCATGGAACCATTCCCTCACACATTGGAAACATGTCAAAAGTCAACACTTTGAACTTTTCTTTAAATCATTTTGAGGGTTCTATCCCTAAGGAATTGTGGACATTGAGGAGTTTACAAAAGCTTGATCTTTCATTGTGTTATCATCTAAGTGGACCTATCCCTTCTTCCATTGAAAACTTGGCCAACTTGACATATCTAGACTTAGGAGAAAACAATCTTTCTAGCCACATTCCTCCTGAGATTGGGAAACTAAGAAACCTTTTGTTTCTTGGTATTGCTGAGAATAACCTTGTTGGTTCCATTCCCCATGAAATTGGCATTTTAACAAATCTTGAGTATCTTGATTTGTCAGGAAATGTTCTCTCTGGTAATATCCCTTCTACAATTAGTAACATGACCAATTTGCATGAAGTTTCAATTTCTAATAACACCCTCAATGGTACAATCCCTTCCTCCATTGGGAGCATGTCTAACTTGACATTGCTATGGCTTGATGGCAATAAACTTTCTGGATCCATCCCTGCATCCATAGGAAACTTGTCTAATCTCTATTCGCTTCAACTCGATTCGAATAGCCTCACCGGATCCATTCCTTCCACAATTGGAAACATGACAAGTCTTGTTGAGATTTTTCTCCGCTTTAACAATCTTTCAGGACACATTCCTGCCTCTGTTGGCAATTTGATCAACTTGGAATCCTTATATCTCCAAGGAAACAATCTCTCTGGATATATTCCTGACTCAATTGGAAAGTTGAAAAGGCTCTCCATTCTTGAACTGTCCTTTAACAAACTCACTGGCACCATTCCACACTCAATTAACAACATTACCAACATGATTGACTTTCTAGTAGCCTCAAATAATCTCACTGGTCAATTGCCACCTCACATTTGCTTAGGTGGTTCATTGAAGTTCTTCAATGTTGATCACAACCATTTCACTGGTCCAGTACCAAGTACCTTAAAGAACTGCTCAAGTCTTGTTAGAATAAGGTTAGAGCAGAACCATTTGAAGGGAGACATATCACAAGATTTTGGCATTTATCCTAATTTGGTGCATATTGACCTGAGTGACAACAAATTTTATGGTCAAATTTCACCAAACTGGGGGAAGAGCCATAATCTTCAGAACTTGTTGATGTCCAATAATAATATTTCTGGTGCTATACCAATACAAATTGTTGAGGCTACCAATCTAGGAAGGCTTCATCTTTCTTCTAATCATTTGAGTGGAAAGATTCCAAATGAAATAAGAAATATGAGAAGCCTGTTTGAACTCAAGATCAGCAACAATCATCTTTCAGGAAACATTCCATCAGATATAGGATCATTGCATGGTCTTCAAATCTTGCACCTAGCAGGAAATGAATTGAGTGGCAACATACCAAGACAAGTTGTGCAGTTACCCAACTTGTTGGAATTGAATTTGAGCAACAACAAACTAGAGGGAAGTATCCCGTCTGATTTTCAATCACTGCAAACTCTTTACTCTCTTGATCTTAGCTGCAATTTGTTGAATGGACCAATACCAAAAGTACTTGGAGAGTTGAAGGAATTGCGATTATTGAACCTTTCACACAACAATCTTTCTGGGACAGTTCCATCAAGCTTTGATGCCATGTCAAGCTTGATTTCTGTCAACATATCATACAATCAACTAGAAGGCCCTCTTCCAAACAATAAAGCCTTTCTTAGTTCTTCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTGGTGCCATGTCCAAGCAATCTTATCAGCAAAAATCACAAGGTCATGTTATTGGTATTACTTCTTTTCTTTGGAGTACTAGTACTTGTGCTTTTTGTGGTGGCTATTTCTGTATATATTCTTTGTAGAAAAGCAAGAAAGAAAACAGGCACAAATCAAGAAACACAGCCAAAAGAACTTTTTTCCATATGGAGCCATGATGGGAAAATGGCATTTGAAACTATCATTGAAGCCACCAACAATTTTGATGACAAATATATCATTGGAATTGGAGGGCAAGGATCTGTTTACAGGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTGAAGAAGCTTCATACAGAAACATCCAACTTGAAATCATTTGAAAATGAGATCCAATCATTGACAGAAATCAGGCACCGAAACATCATAAAGCTGTATGGTTTTTGCCAGCACTCGCGGTTCTCATTTCTGGTTTATAAGTTCTTGGAAGGTGGAAGCTTGGATCAAGTACTAAGAGATGAAACACATGCAACTCTGTTTGATTGGAAAAAGAGGGTGAATGTGGTTAAAGGAGTCGCAAATGCTTTGTCATACATGCATCATGATTGCATACCCCCTATTATTCATCGCGACATATCAAGCAAGAATGTTCTTCTAGATTCAGACTATGAAGCTCATGTATCTGATTTTGGAACAGCCAAGTTCTTGAAACCTGGATCAAGTTGGACAACACTTGCAGTAACCTTTGGCTATGCAGCTCCAGGTAACTAA 2817 0.3798 MPPIMSGKIIVLILLCVFIVKVSSSSEANALLKWKASLEKQSQVMLSSWKNRTSPCKWKGIQCDKSKSITTINLENFGLKGTLHSLSFSSFPNLISINIYNNLFHGTIPSHIGNMSKVNTLNFSLNHFEGSIPKELWTLRSLQKLDLSLCYHLSGPIPSSIENLANLTYLDLGENNLSSHIPPEIGKLRNLLFLGIAENNLVGSIPHEIGILTNLEYLDLSGNVLSGNIPSTISNMTNLHEVSISNNTLNGTIPSSIGSMSNLTLLWLDGNKLSGSIPASIGNLSNLYSLQLDSNSLTGSIPSTIGNMTSLVEIFLRFNNLSGHIPASVGNLINLESLYLQGNNLSGYIPDSIGKLKRLSILELSFNKLTGTIPHSINNITNMIDFLVASNNLTGQLPPHICLGGSLKFFNVDHNHFTGPVPSTLKNCSSLVRIRLEQNHLKGDISQDFGIYPNLVHIDLSDNKFYGQISPNWGKSHNLQNLLMSNNNISGAIPIQIVEATNLGRLHLSSNHLSGKIPNEIRNMRSLFELKISNNHLSGNIPSDIGSLHGLQILHLAGNELSGNIPRQVVQLPNLLELNLSNNKLEGSIPSDFQSLQTLYSLDLSCNLLNGPIPKVLGELKELRLLNLSHNNLSGTVPSSFDAMSSLISVNISYNQLEGPLPNNKAFLSSSIESLKNNKGLCGNVSGLVPCPSNLISKNHKVMLLVLLLFFGVLVLVLFVVAISVYILCRKARKKTGTNQETQPKELFSIWSHDGKMAFETIIEATNNFDDKYIIGIGGQGSVYRAELPSGMVVAVKKLHTETSNLKSFENEIQSLTEIRHRNIIKLYGFCQHSRFSFLVYKFLEGGSLDQVLRDETHATLFDWKKRVNVVKGVANALSYMHHDCIPPIIHRDISSKNVLLDSDYEAHVSDFGTAKFLKPGSSWTTLAVTFGYAAPGN* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2399 938 Gene3D Phosphorylase Kinase; domain 1 729 843 - -
Ahy4g2399 938 Gene3D Ribonuclease Inhibitor 390 699 IPR032675 -
Ahy4g2399 938 PRINTS Leucine-rich repeat signature 572 585 - -
Ahy4g2399 938 PRINTS Leucine-rich repeat signature 215 228 - -
Ahy4g2399 938 Coils Coil 799 819 - -
Ahy4g2399 938 ProSitePatterns Tyrosine protein kinases specific active-site signature. 889 901 IPR008266 GO:0004672|GO:0006468
Ahy4g2399 938 Gene3D Ribonuclease Inhibitor 278 384 IPR032675 -
Ahy4g2399 938 Gene3D Ribonuclease Inhibitor 181 277 IPR032675 -
Ahy4g2399 938 ProSiteProfiles Protein kinase domain profile. 769 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g2399 938 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Ahy4g2399 938 SUPERFAMILY Protein kinase-like (PK-like) 752 936 IPR011009 -
Ahy4g2399 938 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515
Ahy4g2399 938 Pfam Leucine rich repeat 598 657 IPR001611 GO:0005515
Ahy4g2399 938 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 161 - -
Ahy4g2399 938 SUPERFAMILY RNI-like 349 664 - -
Ahy4g2399 938 PANTHER LRR RECEPTOR-LIKE KINASE 14 161 - -
Ahy4g2399 938 Gene3D Transferase(Phosphotransferase) domain 1 844 937 - -
Ahy4g2399 938 SMART LRR_typ_2 524 548 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 260 283 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 164 188 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 332 356 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 284 308 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 212 236 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 572 595 IPR003591 -
Ahy4g2399 938 SMART LRR_typ_2 620 643 IPR003591 -
Ahy4g2399 938 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 936 - -
Ahy4g2399 938 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 153 254 - -
Ahy4g2399 938 SMART LRR_sd22_2 164 193 - -
Ahy4g2399 938 SMART LRR_sd22_2 212 238 - -
Ahy4g2399 938 SMART LRR_sd22_2 308 337 - -
Ahy4g2399 938 SMART LRR_sd22_2 260 286 - -
Ahy4g2399 938 SMART LRR_sd22_2 356 382 - -
Ahy4g2399 938 SUPERFAMILY RNI-like 72 379 - -
Ahy4g2399 938 ProSiteProfiles Leucine-rich repeat profile. 574 597 IPR001611 GO:0005515
Ahy4g2399 938 Pfam Protein kinase domain 771 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g2399 938 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Ahy4g2399 938 Pfam Leucine Rich Repeat 574 596 IPR001611 GO:0005515
Ahy4g2399 938 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
Ahy4g2399 938 PANTHER LRR RECEPTOR-LIKE KINASE 153 254 - -
Ahy4g2399 938 PANTHER LRR RECEPTOR-LIKE KINASE 244 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2399 Ahy-Chr4 121067871 121070708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2399 9 937 Receptor kinase-like Gene Family AT4G08850 44.715 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ahy4g2399 Pkinase 5.50E-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2399 - - aip:107635237 1198.34