Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2371 ATGCCTCAACGAACAGTGAAGAAAGGTGCTGCGGCGAAAAGAGCGAAGACCGCCCTTGAAAACAACAACCATAATGACAACCTTGGGCAAGAGCCTGAAACTGCGGAAGCGGTTGTGAATAATCATGAAGAAGAAGAAGAAAACATAGCTAATGATGAGAAAAGTGTTCTTTCGGATGAGAAGCTCGATGATGTGAAGAACAAAGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACAGTTAGATTTTGAGGATAACTATCCTGAGTATGAACCTTTAGAGGACTATAACGGAGTTGACTATGATGAAAAGGAAATTGAACAAGACGAGCATCAGGAGGTTAGAGATGAAGTAGAGGAAGAGTGCGAAGTAGTTGCAGGAGAAGATGATATTTCAGGTGATGAAGAAATTGAATACGTTTATGAAGAAGTTGAGGTTGATGAGGATGATGAGCATAATGATGAGGAACATGATCATTCGTCACGGATGGCTGATGCGGAGCAAAAGGAGCACCCTGAAGGTGTAAATAAGAGACACAAGCAGAAGGAATTTGAAGTATTTGTCGGAGGCTTATATAAGGATGCTACTGAGGAGGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTAATTACTGAAGTCAGGCTGATGATGAATCCTCATACTAAAAAGAACAGAGGATTTGCCTTCTTGCATTTTGAAACTATTGAACAAGCTAAAAAAGCTGCAACAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCCGTGTTTCTCCTGTTCAAGACAATGATACCATCTATTTGGGTAATATATGCAAGACATGGAAATTAGAAGCTCTAAAAGATAAGCTGAGACATTATGGGGTTGGAAATTTTGAGAACCTGACTTTAGTAGAAGACAGTAACAATGAAGGAATGAACCGTGGATTTGCATTTTTGGATTTTTCATCTCGTTCTGAGGCTAGGAAAGCCTATACACAACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCAGCAGAGATTTCATTTACAGACTCCTTTATTGACCCAGTTGATGATATTATGGCACAGGTTAAAACTGTATTTATAGATTCCCTGCCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGGGAGATTGAAAAGATTGAGCTTGCTAAAAACATGCCAGCTGCCAGTAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGCTGCCGTGGAATGTGCTGATAGCATTACCAGCTCAGGATTGGGCGAAGGTGACAAGAAGGCAAAAGTTAAGGCTAGATTGTCAAGGCCTCTTCGGAAAGGCAGTAGAAAACATGTTAGCCATGCGGCCTACAGTTCTGGTCGCAATTCTGGAATCTTATCAAGGCCTTCAAGAGCTAGGCCTGCACCACGTAGTCTTCCTGCTCGCATGGTAAGACGAATTGAAAGTCATGTTCCACCTGGTAGGCCTTTTAGTGTGATGGATAGACGGCCTGTTAGTGTGAGAGATAGAAGACCTGTTATGTCTATGTCACAGAGATCAAGGCCGGTGTCTCATCTAGCCAGATCCTCTGAGAGGAGATTGAGTACATCTGGATATCCAAAAAGTAGCATGAAGAGAGACTATGGTCTATGTGAGGAATTGCCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGGTCTAGGATGTCCTCTCAAAAACACCTCTCCTACAGGGATTATCCAGCCCATGGCTCTCGCTACCCTGAGCTGCGTAAAGGTACGTCTCGTACTTCAGCAGCTGCACCTATGAGAAGTTATGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCTTTCTTCTTCCCATTTTAATCACCGTGAAGGACACTCCCGTGATTATGAGACACTGTCGGGTTCGAAACGTACTTATTCTGTCATAGATGATGCCCCTCCTCGATATGCTGATACTGGTGCTCGCCAGTCAAGATCACGTTTGGACTATGAGTATGGGGGTAGTATTTCACAATATGGAGATGCCTATGGCGATAGACTTGGAAGATCTAGTCTGGGCTATAGTAATGGCAGGAGTTCTATATCTACTCGAGACTCTCATGGAATGTATAGCAGTCGGCAGAGCACAAGTTACAGTGCAGGTTCTTTTGGTGGAAGTGATCGTGATTTGTACTCAGCAAGTTATGGTGGTGATTACATATCTCGTGGCAGTGATGCTGGTGGCAGATCATATTCGTCAATGTATTCCAGCAGGGGTGTGGGTGGTAGCAGCAGCTATATGAGTGGTAGTAGATCTAGGTCGTATTACTGA 2340 0.4308 MPQRTVKKGAAAKRAKTALENNNHNDNLGQEPETAEAVVNNHEEEEENIANDEKSVLSDEKLDDVKNKEEEVKESIDEYEKDEQLDFEDNYPEYEPLEDYNGVDYDEKEIEQDEHQEVRDEVEEECEVVAGEDDISGDEEIEYVYEEVEVDEDDEHNDEEHDHSSRMADAEQKEHPEGVNKRHKQKEFEVFVGGLYKDATEEDLRKVFGEVGVITEVRLMMNPHTKKNRGFAFLHFETIEQAKKAATELKNPVINGKQCRVSPVQDNDTIYLGNICKTWKLEALKDKLRHYGVGNFENLTLVEDSNNEGMNRGFAFLDFSSRSEARKAYTQLQKRDVVFGVDKPAEISFTDSFIDPVDDIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELAKNMPAASRKDFGFVTFGTHAAAVECADSITSSGLGEGDKKAKVKARLSRPLRKGSRKHVSHAAYSSGRNSGILSRPSRARPAPRSLPARMVRRIESHVPPGRPFSVMDRRPVSVRDRRPVMSMSQRSRPVSHLARSSERRLSTSGYPKSSMKRDYGLCEELPPPRSRVAVDYGSRMSSQKHLSYRDYPAHGSRYPELRKGTSRTSAAAPMRSYVDDGYGQRFERPPLSSSHFNHREGHSRDYETLSGSKRTYSVIDDAPPRYADTGARQSRSRLDYEYGGSISQYGDAYGDRLGRSSLGYSNGRSSISTRDSHGMYSSRQSTSYSAGSFGGSDRDLYSASYGGDYISRGSDAGGRSYSSMYSSRGVGGSSSYMSGSRSRSYY* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2371 779 MobiDBLite consensus disorder prediction 521 546 - -
Ahy4g2371 779 SUPERFAMILY RNA-binding domain, RBD 189 335 IPR035979 GO:0003676
Ahy4g2371 779 MobiDBLite consensus disorder prediction 150 182 - -
Ahy4g2371 779 Gene3D - 133 263 IPR012677 -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 1 101 - -
Ahy4g2371 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Ahy4g2371 779 MobiDBLite consensus disorder prediction 697 726 - -
Ahy4g2371 779 CDD RRM_SF 367 441 - -
Ahy4g2371 779 Coils Coil 35 55 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 81 101 - -
Ahy4g2371 779 Coils Coil 58 85 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 749 779 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 621 666 - -
Ahy4g2371 779 Gene3D - 357 476 IPR012677 -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 744 779 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 37 80 - -
Ahy4g2371 779 Coils Coil 105 125 - -
Ahy4g2371 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 447 IPR000504 GO:0003723
Ahy4g2371 779 MobiDBLite consensus disorder prediction 625 642 - -
Ahy4g2371 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 352 IPR000504 GO:0003723
Ahy4g2371 779 MobiDBLite consensus disorder prediction 159 182 - -
Ahy4g2371 779 SMART rrm1_1 189 262 IPR000504 GO:0003723
Ahy4g2371 779 SMART rrm1_1 269 348 IPR000504 GO:0003723
Ahy4g2371 779 SMART rrm1_1 366 441 IPR000504 GO:0003723
Ahy4g2371 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 424 IPR000504 GO:0003723
Ahy4g2371 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Ahy4g2371 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Ahy4g2371 779 Gene3D - 267 351 IPR012677 -
Ahy4g2371 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 779 - -
Ahy4g2371 779 PANTHER RNA RECOGNITION MOTIF 1 779 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 516 559 - -
Ahy4g2371 779 SUPERFAMILY RNA-binding domain, RBD 359 467 IPR035979 GO:0003676
Ahy4g2371 779 MobiDBLite consensus disorder prediction 444 483 - -
Ahy4g2371 779 MobiDBLite consensus disorder prediction 582 603 - -
Ahy4g2371 779 CDD RRM_SF 270 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2371 Ahy-Chr4 120639831 120648137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2371 180 462 Eukaryotic Initiation Factors Gene Family AT3G16380 24.080 5.67e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2371 - - gmx:100808583 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2698 14 134602831 134607943 Ahy4g2371 4 120639831 120648137 hybridization
Ahy9g0557 9 7824058 7830310 Ahy4g2371 4 120639831 120648137 PCT