Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2236 ATGCACCACTCTCTCCCCCCTTCCCCCCCTCTTAAAATATCCCCACACGCTCTCTCTCTTTCTCTCTCACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACAAATGGATTCACCAAAGAATCACAACAACGCTTTCTCCTTCTTCTTCTCCCTCTCCTCATACCCATGTCCATGTCTTCAACCTCATCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGCTTTCCTCGTTCTCCTCTCCACCCTCATCTTATCTTCTTACCTCTGCTGTAACCGCAACCGTCGCAATAATATTAACAACCCCACCACCACCCACCGTGACGGCGTCGTTCTCCCACGAATAATCTTCGTCGCAGAAGGCGATGATGACGAAGACGGAGACGAAGAGCGCGGCGCGGTGGGGTTGGAACAAAACGTGATAAACTCGTATCCGAGGTTTCAATTCAGCAGGGACAGCAGTAACATCGGACAGAACACCACGTGTTCCATATGTCTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGCAGGCACTATTTCCACGTCTGCTGCCTTGACTCTTGGCTTAGGCTTAATGGCTCCTGCCCCGTTTGCCGGAACTCGCCGCTTCCGACGCCGGTTCCCACGCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 726 0.5344 MHHSLPPSPPLKISPHALSLSLSLFSLSLSLSLFTNGFTKESQQRFLLLLLPLLIPMSMSSTSSFLNHLGLGYSIAIALAFLVLLSTLILSSYLCCNRNRRNNINNPTTTHRDGVVLPRIIFVAEGDDDEDGDEERGAVGLEQNVINSYPRFQFSRDSSNIGQNTTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPVPTPLSTPLQEVVPLSQYAADRRRR* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2236 241 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Ahy4g2236 241 CDD RING-H2_PA-TM-RING 166 209 - -
Ahy4g2236 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 213 IPR013083 -
Ahy4g2236 241 PANTHER RING-H2 FINGER PROTEIN ATL67 58 241 IPR044289 GO:0016567|GO:0016740
Ahy4g2236 241 Pfam Ring finger domain 166 209 IPR001841 -
Ahy4g2236 241 PANTHER RING-H2 FINGER PROTEIN ATL67 58 241 - -
Ahy4g2236 241 SUPERFAMILY RING/U-box 157 215 - -
Ahy4g2236 241 SMART ring_2 167 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2236 Ahy-Chr4 118570987 118572234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2236 59 232 C3H Transcription Factor Family AT5G07040 40.341 9.50e-33 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2546 14 132297023 132298298 Ahy4g2236 4 118570987 118572234 hybridization
Ahy4g2236 4 118570987 118572234 Ahy12g0191 12 3134162 3135089 PCT
Ahy4g2236 4 118570987 118572234 Ahy2g0219 2 2512750 2513931 PCT