Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2229 ATGGAGATGGAGCTTGATTGGGATCTCCATGCGGTGGTTCGAGGCTGCTCCACCCTCACCTCTTCATCTTCATCTTCTTCTTCTTCCTCATCCTCTTCTGGTTTCGGTTACTTTTACTCTCAAGCTTCTCCTTCTTCTGTCCTTGACACTGAAGACCAACACCAACAACAAGGAATTACCAACAATGTTATGTCTTTTTCTGCTGCTTCATATTCATACCCCTTTGGACCAAGGACCGCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTACAAAATCACTCCCTCAACAACAACAATCATTGCAAGCTTCTTCTCCTTTGTCTTCATTCTCTGTAGCACCACCACCACCACCACCAAAACCTGTTCATGCACAAGAGAAGCAACAGAGAAGCAACACCAACAAGCATCCTCACCCTGGTGGTGATTCTGTCAACACCCCAAGATCTAAAAGAAGGAAGAACCAGCTCAAGAGAGTTTGTCAGGTACCAGTTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAGGGATGTTTGGCAAGGAAACAAGTTGAAAGGAACAGAACGGATCCAACAATGTTCATAGTAACCTACACAGCAGAACACAACCACCCTGCTCCAACTCACAGGAACTCTCTTGCCGGATCGACGCGCCAAAAGCCGTTGACACCTCAGGCAGCTACAGCCACCACCACCAACGGTGGAGAATCCGATGAGAAGGCCTTGACACCAACGAAATCGGCTTCGCCTGATATCTCAGTTGCGGAAGAAGAGGCTTTACCACAACATTGTGAAAAGTCATCAGTGAGCAGAGAAGAGAAGGGAGAGGATTTGGCTGATGATGATGATGATGATGAGTTTGGTTTATCTGATATGGTGATACCTGATGATTTCTTTGATAGTTTTGATGAACTGAAAGAGATCACTGGTATTGATGATGATGGAATTAGAGGAGATAATTTCTTTGTTGATCCCTTTTCAGCTATTGCTATGCCTTCTTGGGTTGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1113 0.4546 MEMELDWDLHAVVRGCSTLTSSSSSSSSSSSSSGFGYFYSQASPSSVLDTEDQHQQQGITNNVMSFSAASYSYPFGPRTAIEELHELCKPFFTKSLPQQQQSLQASSPLSSFSVAPPPPPPKPVHAQEKQQRSNTNKHPHPGGDSVNTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQAATATTTNGGESDEKALTPTKSASPDISVAEEEALPQHCEKSSVSREEKGEDLADDDDDDEFGLSDMVIPDDFFDSFDELKEITGIDDDGIRGDNFFVDPFSAIAMPSWVANSAATAAGGS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2229 370 SUPERFAMILY WRKY DNA-binding domain 168 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy4g2229 370 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 369 IPR044810 GO:0003700
Ahy4g2229 370 MobiDBLite consensus disorder prediction 228 274 - -
Ahy4g2229 370 MobiDBLite consensus disorder prediction 227 313 - -
Ahy4g2229 370 Gene3D WRKY domain 154 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy4g2229 370 SMART WRKY_cls 170 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy4g2229 370 ProSiteProfiles WRKY domain profile. 165 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy4g2229 370 MobiDBLite consensus disorder prediction 282 299 - -
Ahy4g2229 370 MobiDBLite consensus disorder prediction 99 162 - -
Ahy4g2229 370 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 369 - -
Ahy4g2229 370 Pfam WRKY DNA -binding domain 172 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2229 Ahy-Chr4 118493884 118496400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2229 3 369 WRKY Transcription Factor Family AT4G01250 44.324 8.64e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy4g2229 WRKY 3.70E-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2229 K13425 - gmx:100170675 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2537 14 132203494 132206042 Ahy4g2229 4 118493884 118496400 hybridization
Ahy4g2229 4 118493884 118496400 Ahy12g0179 12 3043457 3045318 PCT
Ahy4g2229 4 118493884 118496400 Ahy2g0208 2 2432672 2434511 PCT
Ahy12g0179 12 3043457 3045318 Ahy4g2229 4 118493884 118496400 PCT
Ahy2g0208 2 2432672 2434511 Ahy4g2229 4 118493884 118496400 PCT