LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy4g2229	ATGGAGATGGAGCTTGATTGGGATCTCCATGCGGTGGTTCGAGGCTGCTCCACCCTCACCTCTTCATCTTCATCTTCTTCTTCTTCCTCATCCTCTTCTGGTTTCGGTTACTTTTACTCTCAAGCTTCTCCTTCTTCTGTCCTTGACACTGAAGACCAACACCAACAACAAGGAATTACCAACAATGTTATGTCTTTTTCTGCTGCTTCATATTCATACCCCTTTGGACCAAGGACCGCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTACAAAATCACTCCCTCAACAACAACAATCATTGCAAGCTTCTTCTCCTTTGTCTTCATTCTCTGTAGCACCACCACCACCACCACCAAAACCTGTTCATGCACAAGAGAAGCAACAGAGAAGCAACACCAACAAGCATCCTCACCCTGGTGGTGATTCTGTCAACACCCCAAGATCTAAAAGAAGGAAGAACCAGCTCAAGAGAGTTTGTCAGGTACCAGTTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAGGGATGTTTGGCAAGGAAACAAGTTGAAAGGAACAGAACGGATCCAACAATGTTCATAGTAACCTACACAGCAGAACACAACCACCCTGCTCCAACTCACAGGAACTCTCTTGCCGGATCGACGCGCCAAAAGCCGTTGACACCTCAGGCAGCTACAGCCACCACCACCAACGGTGGAGAATCCGATGAGAAGGCCTTGACACCAACGAAATCGGCTTCGCCTGATATCTCAGTTGCGGAAGAAGAGGCTTTACCACAACATTGTGAAAAGTCATCAGTGAGCAGAGAAGAGAAGGGAGAGGATTTGGCTGATGATGATGATGATGATGAGTTTGGTTTATCTGATATGGTGATACCTGATGATTTCTTTGATAGTTTTGATGAACTGAAAGAGATCACTGGTATTGATGATGATGGAATTAGAGGAGATAATTTCTTTGTTGATCCCTTTTCAGCTATTGCTATGCCTTCTTGGGTTGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA	1113	0.4546	MEMELDWDLHAVVRGCSTLTSSSSSSSSSSSSSGFGYFYSQASPSSVLDTEDQHQQQGITNNVMSFSAASYSYPFGPRTAIEELHELCKPFFTKSLPQQQQSLQASSPLSSFSVAPPPPPPKPVHAQEKQQRSNTNKHPHPGGDSVNTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQAATATTTNGGESDEKALTPTKSASPDISVAEEEALPQHCEKSSVSREEKGEDLADDDDDDEFGLSDMVIPDDFFDSFDELKEITGIDDDGIRGDNFFVDPFSAIAMPSWVANSAATAAGGS*	371

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy4g2229	370	SUPERFAMILY	WRKY DNA-binding domain	168	231	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Ahy4g2229	370	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	369	IPR044810	GO:0003700
Ahy4g2229	370	MobiDBLite	consensus disorder prediction	228	274	-	-
Ahy4g2229	370	MobiDBLite	consensus disorder prediction	227	313	-	-
Ahy4g2229	370	Gene3D	WRKY domain	154	224	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Ahy4g2229	370	SMART	WRKY_cls	170	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Ahy4g2229	370	ProSiteProfiles	WRKY domain profile.	165	231	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Ahy4g2229	370	MobiDBLite	consensus disorder prediction	282	299	-	-
Ahy4g2229	370	MobiDBLite	consensus disorder prediction	99	162	-	-
Ahy4g2229	370	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	3	369	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy4g2229	Ahy-Chr4	118493884	118496400	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy4g2229	3	369	WRKY Transcription Factor Family	AT4G01250	44.324	8.64e-82	250

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ahy4g2229		WRKY	3.70E-25	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy4g2229	K13425		-	gmx:100170675	359.377

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy14g2537	14	132203494	132206042	Ahy4g2229	4	118493884	118496400	hybridization
Ahy4g2229	4	118493884	118496400	Ahy12g0179	12	3043457	3045318	PCT
Ahy4g2229	4	118493884	118496400	Ahy2g0208	2	2432672	2434511	PCT
Ahy12g0179	12	3043457	3045318	Ahy4g2229	4	118493884	118496400	PCT
Ahy2g0208	2	2432672	2434511	Ahy4g2229	4	118493884	118496400	PCT

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