Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2212 ATGGCAAATGCACACGCATTAGAGGAAGAGGAAGAAGAAGGAGAGGGACACGAAGCGGTGGAGGAAATCCAACGCGTCATTGAATCGGTTGCGCAATTCGGACAGTATAGAAAGACACAGAGAAAAGAATGTCACAACTTGGTGCGGCGGTTCAAACTCATGCTGCCTATCGTGGAAGAGCTCCGAGATATTCCGGAGCCCTTCCACGAAAACGGCATCGTTTGGTTGAAGAAACTTAGGGATGCACTCTTGTTTGCCAAGGAACTCTTGAGGTTATGTAGCCAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAAGGTGTTTATGAGAAATTGAGTCAAGCATTTGAAGATGTGCCTTGTGAGGAATTAGGAATCTCAGATGAAGTCAGAGAACAGATTGAGCTAATGCACACTCAGCTCAAGCGGGCGAGGAGGAGGACGGATACACAGGACATGGAGCTTGCAATGGATATGATGGTGGTGTTATCCGGCGATGAGCAACGGAGCGCCGACAGTGCCATCATTGAGAGGCTAGCAAAGAAATTAGAGCTTCAAAGGGTTGAGGATCTTAAGATAGAAACCTTGGCGATCAAGCAACTGGCTGATGAAAGAAAAGGGCAACAAGTAGATAGCACCAAGAAAATAATTGGCCTCCTTAACAAGTTGAAGAGAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTCCTGCCTAGGGTGCTTGTGAAGAGCATATCTTTGGTTATTCCTCATGAGTTTCTTTGTCCTATAACCCTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGAATCCAAACATAATACCTGTCCAAAGACAAGGCAAACCCTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAGCATAATTGAAGAATGGTGTGAGAAAAACCACTTCAAACTACCAAAGAAGTTCAAATCCTCAAGCCAAAACAATGGTCCAATTATCAACATACAAGAAATCCCACCTTTGGTTGAAAGCCTATCATCAATTCATTTAGAAGAACAGAGAAGAGCGGTCGAGAAGATTCGAATGCTGTCGAAAGAAAGCCCCGAGAATCGGATATTGATTGCTGAGCATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCATTGTTGAATCTTTCAATTGATGAGAAGAACAAGAGGCTAATATCAAAAGAAGGTGCTATTCCAGCAATCATAGAAGTTTTGGAGAATGGTAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTCTCAATGCTTGATGAGAACAAAGAACTTGTGGGATTGTCAAATGGGATTCCACCATTGGTGAAACTTTTGAGGAATGGAACAGTTAGAGGGAAAAAAGATGCTATTACAGCACTTTTTAATTTGTCCCTTAACCATGCAAATAAAAGCAGGGCGATTAGTGCTGGTATTGTCGCACCTTTGCTTCAGTTGCTTAAGGACACAAAAACAAACATGATTGACGAGGCTCTATCCATTCTGTTACTGCTCTCCTCGATTTCCGAGGGGAGACAGGAGATTGGACAGCTGTCATTTATCGAGACACTTGTTGAGTTCATTAAGGATGGGACCCCCAAGAACAAGGAGTGTGCTGCTTCTGTGCTCCTGGAGTTGTGTACAAATAACTACTCTTATATACTTGCAGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGGGAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATTTAG 1899 0.4213 MANAHALEEEEEEGEGHEAVEEIQRVIESVAQFGQYRKTQRKECHNLVRRFKLMLPIVEELRDIPEPFHENGIVWLKKLRDALLFAKELLRLCSQGSKILLAMETEAYMIKFQGVYEKLSQAFEDVPCEELGISDEVREQIELMHTQLKRARRRTDTQDMELAMDMMVVLSGDEQRSADSAIIERLAKKLELQRVEDLKIETLAIKQLADERKGQQVDSTKKIIGLLNKLKRIAGMEETSVLDDPVLPRVLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFESKHNTCPKTRQTLDHLQLAPNCALKSIIEEWCEKNHFKLPKKFKSSSQNNGPIINIQEIPPLVESLSSIHLEEQRRAVEKIRMLSKESPENRILIAEHGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLISKEGAIPAIIEVLENGSIVAKENSAACLFSLSMLDENKELVGLSNGIPPLVKLLRNGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLQLLKDTKTNMIDEALSILLLLSSISEGRQEIGQLSFIETLVEFIKDGTPKNKECAASVLLELCTNNYSYILAALQYGVYEHLIQIKGSGTNRAQRKANALLDLISRSEQI* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2212 632 Coils Coil 134 154 - -
Ahy4g2212 632 CDD RING-Ubox_PUB 263 305 IPR045210 -
Ahy4g2212 632 Gene3D - 335 631 IPR011989 -
Ahy4g2212 632 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Ahy4g2212 632 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Ahy4g2212 632 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 14 630 - -
Ahy4g2212 632 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Ahy4g2212 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 333 IPR013083 -
Ahy4g2212 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 517 IPR000225 GO:0005515
Ahy4g2212 632 SUPERFAMILY ARM repeat 347 628 IPR016024 -
Ahy4g2212 632 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Ahy4g2212 632 Gene3D - 16 129 IPR036537 GO:0007166
Ahy4g2212 632 SMART arm_5 423 463 IPR000225 GO:0005515
Ahy4g2212 632 SMART arm_5 505 545 IPR000225 GO:0005515
Ahy4g2212 632 SMART arm_5 464 504 IPR000225 GO:0005515
Ahy4g2212 632 SMART arm_5 546 586 IPR000225 GO:0005515
Ahy4g2212 632 SMART arm_5 382 422 IPR000225 GO:0005515
Ahy4g2212 632 SUPERFAMILY RING/U-box 258 333 - -
Ahy4g2212 632 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Ahy4g2212 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Ahy4g2212 632 PANTHER U BOX DOMAIN-CONTAINING 14 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2212 Ahy-Chr4 117934796 117938096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2212 20 632 U-box Gene Family AT5G42340 62.541 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2212 - - adu:107485837 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2516 14 130874923 130878084 Ahy4g2212 4 117934796 117938096 hybridization