Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2197 ATGGGGTTCCCCGTCGGCTACACGGAAGTCCTCGTCCCAAACATCTTCCTCCGCCTCCTCACCTTCCTCGCCGCCCTCCGAAACCTCGTACTCTCCCTCTTCCGCCTCCTCGGCCTCTCTGAACTCCTCGACACTACCACCACCGACCCCTACCCTCTCTCTTGGACCCAGGCCCACCAGGCCCAATTTCGGCCCACCACCACCACCACAACCACCATCCCTTCCCTCTCCGCTATCCTCATCCGCGAATTCCTCCCCGTCATGAAATTCAGCGACCTAGCCGGCGCCGGAGATTTCATTCCGGCCACGACGGAGAACGGATGCGCGGTTTGCCTGAGCGAATTCTCCGCGGAAGACGAGATCAGGTGTATGGCGAACTGCAGACACGTGTTCCATCGCGGTTGCGTGGACCGTTGGATGGACCACGATCAAAGGACTTGCCCTCTCTGTAGGACTCCTTTCGTTCCCGATCACAAGGTGAACGAGTACAACCAACGCCTCTGGGAAGCTTCTGGAGTAGCGGAATTCTACGCAGATTAA 540 0.5889 MGFPVGYTEVLVPNIFLRLLTFLAALRNLVLSLFRLLGLSELLDTTTTDPYPLSWTQAHQAQFRPTTTTTTTIPSLSAILIREFLPVMKFSDLAGAGDFIPATTENGCAVCLSEFSAEDEIRCMANCRHVFHRGCVDRWMDHDQRTCPLCRTPFVPDHKVNEYNQRLWEASGVAEFYAD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2197 179 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 177 - -
Ahy4g2197 179 SMART ring_2 108 150 IPR001841 -
Ahy4g2197 179 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 177 - -
Ahy4g2197 179 SUPERFAMILY RING/U-box 92 160 - -
Ahy4g2197 179 Pfam Ring finger domain 108 151 IPR001841 -
Ahy4g2197 179 ProSiteProfiles Zinc finger RING-type profile. 108 151 IPR001841 -
Ahy4g2197 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2197 Ahy-Chr4 117496699 117497717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2197 1 174 C3H Transcription Factor Family AT1G63840 46.857 7.61e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2197 K16281 - gmx:100813224 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2485 14 130227491 130228545 Ahy4g2197 4 117496699 117497717 hybridization
Ahy4g2197 4 117496699 117497717 Ahy12g0095 12 1963414 1964418 PCT
Ahy4g2197 4 117496699 117497717 Ahy2g0145 2 1618998 1619713 PCT
Ahy12g0095 12 1963414 1964418 Ahy4g2197 4 117496699 117497717 PCT
Ahy2g0145 2 1618998 1619713 Ahy4g2197 4 117496699 117497717 PCT