Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2137 ATGGATCATGGGGACCAAATGGCATCTTACTATATGCAGCAGAGAGGAATACCTGGTTCTGGAGCACAGCCAGAGTTTTCGGCCGGAATCCGGTCGCTGTCTAGCCCCAACCTACCATTTCAATCCGGCATTGGCAGTGGTGGATCAATTGGATCCACTATACAGCTAGAATCTTCAGGGATTTCGACCCACGGTGTCAATGTTGGTGCTCCTCCGGGGGTACCGCCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCAAGGAAATATGGGACTGATGGAACTGTGTTGGCTCTTACACCAACTTCGTCGAGTCATCCCGGAGCCATGACAACACCAGGCCAGAAACGGGGCCGAGGACGGCCCCCTGGGACTGGGAAGAAACAGCAATTGGCATCACTTGGTGAGATGATTTCTGGTTCGGCCGGGATGGGATTCACTCCTCATGTCATCAACATAGCAAGTGGAGAAGACATTGCAACGAAAATTATGGCATTTTCTCAGCAGGGGTCTAGATTTGTGTTTATTTTGTCTGCCACCGGTGCTGTTTCCACTGTCACACTTCGCCAACCTTCAACTTCAGGTGGCTCAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTACTGATAATGCTGGATCACGCAATCGAACTGGCGGACTAACTGTTTCCCTTGCTAGTCCTGACGGACGAGTCATTGGTGGAGGAGTTGGGGGAGTGCTCATTGCATCAAGTCCTGTTCAGGTGATAGTTGGAAGCTTTATATGGGGTGGATCAAGAACAAAGAAGAAAAAGGAAAGCACAGAAGGGGTAGAAGCTGCTATGGAGTCGGACCACCAACCGATTCACAATCCGGTTGCACTAAACAGCATTTCGCCGAATCAAAATCTTACTCCAACCCCATCTTTGAGTCCGTGGCCGGCGTCGCGTCCCTTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1002 0.504 MDHGDQMASYYMQQRGIPGSGAQPEFSAGIRSLSSPNLPFQSGIGSGGSIGSTIQLESSGISTHGVNVGAPPGVPPGEPVKRKRGRPRKYGTDGTVLALTPTSSSHPGAMTTPGQKRGRGRPPGTGKKQQLASLGEMISGSAGMGFTPHVINIASGEDIATKIMAFSQQGSRFVFILSATGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTDNAGSRNRTGGLTVSLASPDGRVIGGGVGGVLIASSPVQVIVGSFIWGGSRTKKKKESTEGVEAAMESDHQPIHNPVALNSISPNQNLTPTPSLSPWPASRPLDMRNSHVDIDLMRG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2137 333 CDD DUF296 147 261 IPR005175 -
Ahy4g2137 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 - -
Ahy4g2137 333 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Ahy4g2137 333 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Ahy4g2137 333 MobiDBLite consensus disorder prediction 96 111 - -
Ahy4g2137 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 IPR039605 GO:0003680
Ahy4g2137 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 264 - -
Ahy4g2137 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Ahy4g2137 333 MobiDBLite consensus disorder prediction 297 318 - -
Ahy4g2137 333 ProSiteProfiles PPC domain profile profile. 142 282 IPR005175 -
Ahy4g2137 333 MobiDBLite consensus disorder prediction 65 129 - -
Ahy4g2137 333 Gene3D - 148 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2137 Ahy-Chr4 115650212 115654469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2137 80 333 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 54.753 2.34e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2137 - - gmx:100814615 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2409 14 127518185 127522650 Ahy4g2137 4 115650212 115654469 hybridization
Ahy4g2137 4 115650212 115654469 Ahy12g0038 12 1403639 1408503 PCT
Ahy4g2137 4 115650212 115654469 Ahy2g0002 2 20436 25041 PCT
Ahy12g0038 12 1403639 1408503 Ahy4g2137 4 115650212 115654469 PCT
Ahy2g0002 2 20436 25041 Ahy4g2137 4 115650212 115654469 PCT